Factsheet for TraesCS6A01G207600.3

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	peroxisome
TargetP:	plastid
WoLF PSORT:	peroxisome
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G190200.2
TraesCS1B01G192300.3
TraesCS1D01G194300.1
TraesCS2A01G327600.1
TraesCS2B01G354400.1
TraesCS2D01G335300.1
TraesCS4A01G113900.1
TraesCS4B01G190200.1
TraesCS4D01G191600.1
TraesCS6A01G207600.3
TraesCS6B01G236300.4
TraesCS6D01G191300.1
TraesCS7D01G441700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42490.1	TraesCS4A01G113900.1	AT1G13520.1	21798944
AT2G42490.1	TraesCS4B01G190200.1	AT1G13520.1	21798944
AT2G42490.1	TraesCS4D01G191600.1	AT1G13520.1	21798944
AT2G42490.1	TraesCS7D01G441700.1	AT1G13520.1	21798944
AT2G42490.1	TraesCS2A01G327600.1	AT2G42490.1	21798944
AT2G42490.1	TraesCS2B01G354400.1	AT2G42490.1	21798944
AT2G42490.1	TraesCS2D01G335300.1	AT2G42490.1	21798944
AT2G42490.1	TraesCS6A01G207600.3	AT2G42490.1	21798944
AT2G42490.1	TraesCS6B01G236300.4	AT2G42490.1	21798944
AT2G42490.1	TraesCS6D01G191300.1	AT2G42490.1	21798944
AT2G42490.1	TraesCS1A01G190200.2	AT5G46570.1	21798944
AT2G42490.1	TraesCS1B01G192300.3	AT5G46570.1	21798944
AT2G42490.1	TraesCS1D01G194300.1	AT5G46570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G191300.1	Wheat	peroxisome	98.41	98.41
TraesCS6B01G236300.4	Wheat	cytosol	84.73	98.0
HORVU6Hr1G053060.2	Barley	peroxisome	96.15	96.92
Os02t0593100-00	Rice	cytosol	53.12	85.84
TraesCS2A01G327600.1	Wheat	golgi	87.78	85.73
GSMUA_Achr6P06650_001	Banana	peroxisome	79.15	85.39
GSMUA_Achr10P...	Banana	peroxisome	79.28	84.2
Os04t0136200-00	Rice	cytosol, peroxisome	67.07	82.38
KRG99420	Soybean	plastid	80.08	78.93
KRH69629	Soybean	peroxisome	79.42	78.68
KRH45608	Soybean	mitochondrion	79.95	78.59
VIT_00s0225g00090.t01	Wine grape	peroxisome	80.08	77.91
CDY47975	Canola	peroxisome	79.02	76.77
CDY14839	Canola	peroxisome, plastid	78.88	76.65
Solyc05g013440.2.1	Tomato	peroxisome, plastid	78.75	76.42
AT2G42490.1	Thale cress	peroxisome	78.75	76.42
VIT_17s0000g09100.t01	Wine grape	peroxisome	79.81	75.98
KRH54329	Soybean	plastid	77.69	75.58
Bra016871.1-P	Field mustard	plastid	78.62	75.22
GSMUA_Achr6P12170_001	Banana	peroxisome	79.42	74.47
Solyc08g014330.2.1	Tomato	peroxisome, plastid	77.56	74.11
PGSC0003DMT400059626	Potato	peroxisome	77.29	74.05
Solyc06g071700.1.1	Tomato	plastid	76.1	74.03
PGSC0003DMT400069411	Potato	plastid	66.0	72.03
CDY35376	Canola	plastid	78.62	55.59
CDY22564	Canola	peroxisome, plastid	78.88	55.26
KRH74530	Soybean	cytosol	21.91	54.1
KRH03234	Soybean	nucleus	75.03	43.2
TraesCS2A01G076300.1	Wheat	cytosol	16.73	27.81
TraesCS4A01G020900.1	Wheat	plastid	25.63	27.77

Protein Annotations

KEGG:00260+1.4.3.21	KEGG:00350+1.4.3.21	KEGG:00360+1.4.3.21	KEGG:00410+1.4.3.21	KEGG:00950+1.4.3.21	KEGG:00960+1.4.3.21
Gene3D:2.70.98.20	Gene3D:3.10.450.40	MapMan:50.1.4	InterPro:Cu_amine_oxidase	InterPro:Cu_amine_oxidase_C	InterPro:Cu_amine_oxidase_C_sf
InterPro:Cu_amine_oxidase_N-reg	InterPro:Cu_amine_oxidase_N2	InterPro:Cu_amine_oxidase_N3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005507	GO:GO:0008131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009308	GO:GO:0048038
GO:GO:0055114	InterPro:IPR036460	PFAM:PF01179	PFAM:PF02727	PFAM:PF02728	PANTHER:PTHR10638
PANTHER:PTHR10638:SF18	SUPFAM:SSF49998	SUPFAM:SSF54416	EnsemblPlantsGene:TraesCS6A01G207600	EnsemblPlants:TraesCS6A01G207600.3	SEG:seg

Description

No Description!

Coordinates

chr6A:+:371231940..371238502

Molecular Weight (calculated)

84122.2 Da

IEP (calculated)

6.547

GRAVY (calculated)

-0.341

Length

753 amino acids

Sequence
(BLAST)

001: MAVSDEKAQG CRSGAAAGKA ASPVKPNSGA VMEEITDSPS TTAKASSKGI YGIPIMTRAQ RSHPLDPLSA AEIAVAVATV RAAGRTPEVR DSMRFVEVVL
101: LEPEKNVVAL ADAYFFPPFQ PSLLPRTKGG PVIPSRLPPR RARLVVYNKQ TNETSIWVVE LSEVHAATRG GHHRGKVISA EVVPDVQPAM DAMEYAECEA
201: TVKDFPPFIE AMKKRGIDDM ELVMVDAWCA GYYSDADAPN RRLGKPLIFC RTESDSPMEN GYARPVEGIH VIVDMQNNIV IEFEDSKFVP LPPPDHLRNY
301: TPGETRGGVD RSDVKPLIIS QPEGPSFRIT GSFVEWQKWN FRVGFTPKEG LVIHSVAYVD GNRGRRPIAH RLSFVEMVVP YGDPNEPHYR KNAFDVGEDG
401: LGKNAHSLKK GCDCLGYIKY FDAHFTNFTG GVETIENCVC LHEEDHGILW KHQDWRTGLA EVRRSRRLTV SFICTIANYE YGFYWHFYQD GKIESEVKLT
501: GILSLGALMP GEQRKYGTTI APSLYAPVHQ HFFVARMDMA VDCKPNEAYN QVVEVNVKVE SSGPNNMHNN AFYAEEELLQ SELLAMRDCD PSSARHWIVR
601: NTRTVNRTGQ PTGYKLIPGS NCLPFCLPEA KFLRRAGFLK HNLWVTSYKS DEIFPGGEFP NQNPRIHEGL ATWVKKDRSL EETNIVLWYV FGITHIPRLE
701: DWPVMPVERS GFIIMPHGFF NCSPAVDVPP ASDVDAKEAE TPKDIQTELI SKL

Best Arabidopsis Sequence Match ( AT1G31690.1 )
(BLAST)

001: MAQVHLTIFI FSSIFVISSS SFIPPPHPFD PLTETELKLV RNIINKSYPI GHNHKFTFQY VGLNEPEKSL VLSWHSSPDR NVKPPPRQAF VIARDKGMSR
101: EIVIDFSTRA IVSNKIHVGN GNPMLTIDEQ QAATAVVQKY KPFCDSIIKR GLNLSEVVVT SSTMGWFGET KTKRFIRTIP FYLNGSVNTY LRPIEGMTII
201: VNLDQMKVTG FKDRFTGPMP KANGREYRIS KLKPPFGPSL RSAVVFQPDG PGFKIDGHVV RWANWEFHMS FDVRAGLVIS LASIFDMDMN RYRQVLYKGH
301: LSEMFVPYMD PNDDWYFISY LDCGEFGCGQ TAVSLEPYTD CPPNAAFMDG IFPGQDGTPT KISNVMCIFE KYAGDIMWRH TEAEVPGLKI TEVRPDVSLV
401: ARMVTTVGNY DYIIEYEFKP SGSIKMGVGL TGVLEVKPVE YVHTSEIKED DIYGTIVADN TVGVNHDHFV TFRLDLDIDG TENSFVRTEL VTKRTPKSVN
501: TPRKSYWTTK RNTAKTEADA RVKLGLRAEE LVVVNPTKKT KHGNEVGYRL LPGPASSPLL VQDDYPQIRA AFTNYNVWIT PYNKSEVWAS GLYADRSQGD
601: DTLAVWSQRD REIENKDIVM WYTVGFHHVP CQEDFPTMPT MFGGFELRPT NFFEQNPVLK AKPFNLTTIP KCTTKNE

Arabidopsis Description

Amine oxidase [Source:UniProtKB/TrEMBL;Acc:F4IAX0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.