CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70212
CDX90882
CDX90948
CDX97257
CDX97882
CDY01921
CDY04918
CDY14147
CDY15842
CDY16635
CDY21322
CDY44869
CDY45430
CDY51364
CDY63411
CDY64806
CDY65665
CDY67888

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25920.1	CDY15842	AT2G22190.1	21798944
AT4G25920.1	CDY63411	AT2G22190.1	21798944
AT4G25920.1	CDY45430	AT2G29210.1	21798944
AT4G25920.1	CDY65665	AT2G29210.1	21798944
AT4G25920.1	CDX97882	AT2G29480.1	21798944
AT4G25920.1	CDY51364	AT2G29480.1	21798944
AT4G25920.1	CDX90948	AT4G02150.1	21798944
AT4G25920.1	CDX97257	AT4G02150.1	21798944
AT4G25920.1	CDY01921	AT4G02150.1	21798944
AT4G25920.1	CDY64806	AT4G02150.1	21798944
AT4G25920.1	CDX90882	AT4G04950.1	21798944
AT4G25920.1	CDY16635	AT4G04950.1	21798944
AT4G25920.1	CDY21322	AT4G04950.1	21798944
AT4G25920.1	CDY67888	AT4G04950.1	21798944
AT4G25920.1	CDX70212	AT5G04600.1	21798944
AT4G25920.1	CDY04918	AT5G04600.1	21798944
AT4G25920.1	CDY14147	AT5G04600.1	21798944
AT4G25920.1	CDY44869	AT5G04600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86571	Canola	cytosol	20.21	45.35
CDY27327	Canola	cytosol	28.5	31.25
AT4G25920.1	Thale cress	mitochondrion, plastid	62.18	30.77
CDX99886	Canola	cytosol	34.2	30.28
CDX94769	Canola	cytosol	52.85	27.35
CDY48999	Canola	cytosol	54.4	27.06
CDY50787	Canola	cytosol	44.04	26.23
CDY59993	Canola	cytosol, plastid	34.72	24.54
CDX99797	Canola	plastid	44.04	22.73
CDY53420	Canola	cytosol	37.82	21.73
CDX83387	Canola	cytosol	39.9	21.27
CDY47276	Canola	mitochondrion	40.41	21.2
CDY10119	Canola	mitochondrion	40.41	21.2
CDY10120	Canola	mitochondrion	35.75	20.41
CDX90231	Canola	mitochondrion	38.34	20.22
CDX83388	Canola	plastid	39.9	20.1
CDY47275	Canola	cytosol	39.9	20.05
CDY51469	Canola	mitochondrion	37.82	19.95
CDX95668	Canola	mitochondrion	39.38	19.9
CDX95667	Canola	mitochondrion, plastid	38.86	19.68
CDY57749	Canola	mitochondrion	35.23	19.32
CDX90232	Canola	mitochondrion	34.72	18.82
CDY43323	Canola	mitochondrion	36.27	18.82
CDY57750	Canola	plastid	36.27	18.77
CDY65207	Canola	mitochondrion	31.09	18.63
CDX90173	Canola	mitochondrion	35.75	18.55
CDX95813	Canola	mitochondrion	30.05	18.41
CDY51468	Canola	mitochondrion	34.2	18.33
CDY15546	Canola	plastid	36.79	18.16
CDX98187	Canola	mitochondrion	34.2	18.08
CDY35144	Canola	mitochondrion	29.53	18.04
CDX86573	Canola	mitochondrion	33.68	17.91
CDX99796	Canola	mitochondrion	36.79	17.88
CDX99887	Canola	extracellular, plasma membrane	32.12	17.46
CDY15545	Canola	mitochondrion	30.05	17.42
CDY23447	Canola	mitochondrion	17.1	16.84
CDY71779	Canola	mitochondrion	27.98	15.34
CDY03244	Canola	cytosol	20.21	15.29
CDY28820	Canola	cytosol	29.53	15.28
CDY02744	Canola	mitochondrion	17.62	14.59
CDX92018	Canola	mitochondrion	29.53	14.58
CDX95970	Canola	mitochondrion	27.46	14.32
CDY33565	Canola	plastid	27.98	14.21
CDX92019	Canola	mitochondrion	27.98	13.53
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	23.83	12.04
CDY10122	Canola	mitochondrion	41.97	11.17
CDY41583	Canola	mitochondrion	10.36	8.66
CDX86572	Canola	mitochondrion	1.55	1.69

Protein Annotations

EnsemblPlants:CDY65427	EnsemblPlantsGene:GSBRNA2T00046568001	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3	PFAM:PF03478
ProteinID:CDY65427	ProteinID:CDY65427.1	UniParc:UPI0004EE92E9	UniProt:A0A078JJA2	MapMan:35.2	:

Description

BnaCnng47050DBnaCnng47050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJA2]

Coordinates

chrLK034783:+:6466..7210

Molecular Weight (calculated)

22064.1 Da

IEP (calculated)

4.590

GRAVY (calculated)

-0.334

Length

193 amino acids

Sequence
(BLAST)

001: MSSLMFSKED NRFYIPSRGG NYLCYLVEKQ EKLEVMDLKF DEFPASVYEE VAKLSSLSRT DHLVESPTGQ LFLVKWYGED SEVLTDSEKD DENEGSTLMH
101: VTKKIMVYRA GVQSGYYEKT MIYTEDIGDL CIFLGHSQAF CVPVSSSPGL KPNCIYFVGR NFGVYDLTTK TCTAFSTQYD GPVRRSEFPY WPL

Best Arabidopsis Sequence Match ( AT4G25920.1 )
(BLAST)

001: MSKLIINRIF KPSVCKNFLR HANVRLFSSA THTSTKVNQP FSSKPAFPFL LIDYILNNPN SSSDGRVTTN VYGNEKEVLI KDKDLKEEVC DAMTVGFSRD
101: GLRVELCGNH GDVCSPTIFY KPTDPEIEDL TVDLPPLPTG SQIQSLVMSS LPKRDKNWVV VVKLLGSQLS MCRPFGSRKW INIQTKPQNI NPSSSIMFSK
201: KEKKFYVPTP GGNILCYLDP HSEDDDLIDF VELEFDDLPK SVFQELADVS TCSRTDHLVE SPTGQLFLVK WYGEDLEDID NTTLYNVTKK FMVFKEGEKP
301: SCVYTKKMIY TEDIGDLCIF VGHSEAFCVP ASSSPGLKPN CIYFVGYNFG VYDLTTKTCT MFLTKDDNPL RKLEFPYWPP PASFPVLAPN

Arabidopsis Description

Uncharacterized protein At4g25920 [Source:UniProtKB/TrEMBL;Acc:Q8H1S2]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.