CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
plastid 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92019	Canola	mitochondrion	74.68	73.18
CDX86571	Canola	cytosol	8.44	38.37
CDY23447	Canola	mitochondrion	18.41	36.73
CDY02744	Canola	mitochondrion	19.95	33.48
CDX95813	Canola	mitochondrion	26.6	33.02
CDY71779	Canola	mitochondrion	28.9	32.1
CDY59993	Canola	cytosol, plastid	22.25	31.87
CDY27327	Canola	cytosol	14.32	31.82
CDY65207	Canola	mitochondrion	26.09	31.68
CDY41583	Canola	mitochondrion	18.67	31.6
CDX95970	Canola	mitochondrion	29.41	31.08
CDY33565	Canola	plastid	29.41	30.26
CDX95667	Canola	mitochondrion, plastid	28.9	29.66
CDY47276	Canola	mitochondrion	27.88	29.62
CDY10120	Canola	mitochondrion	25.58	29.59
CDY57749	Canola	mitochondrion	26.6	29.55
CDY65427	Canola	cytosol	14.58	29.53
CDY10119	Canola	mitochondrion	27.62	29.35
CDX83388	Canola	plastid	28.39	28.98
CDX99797	Canola	plastid	27.62	28.88
CDY15545	Canola	mitochondrion	24.55	28.83
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	28.13	28.8
CDX83387	Canola	cytosol	26.6	28.73
CDX90231	Canola	mitochondrion	26.85	28.69
CDY57750	Canola	plastid	27.37	28.69
CDX99887	Canola	extracellular, plasma membrane	25.83	28.45
CDY50787	Canola	cytosol	23.53	28.4
CDY43323	Canola	mitochondrion	26.85	28.23
CDX98187	Canola	mitochondrion	26.34	28.22
CDY51469	Canola	mitochondrion	26.34	28.14
CDX86573	Canola	mitochondrion	26.09	28.1
CDX90173	Canola	mitochondrion	26.6	27.96
CDY28820	Canola	cytosol	26.6	27.88
CDX86572	Canola	mitochondrion	12.53	27.68
CDX90232	Canola	mitochondrion	25.06	27.53
CDY51468	Canola	mitochondrion	25.06	27.22
CDX99886	Canola	cytosol	15.09	27.06
CDY47275	Canola	cytosol	26.34	26.82
CDY15546	Canola	plastid	26.09	26.09
CDX99796	Canola	mitochondrion	26.34	25.94
CDX95668	Canola	mitochondrion	25.32	25.92
CDX94769	Canola	cytosol	22.25	23.32
CDY48999	Canola	cytosol	22.51	22.68
CDY03244	Canola	cytosol	14.32	21.96
CDY53420	Canola	cytosol	18.41	21.43
CDY35144	Canola	mitochondrion	16.62	20.57
CDY10122	Canola	mitochondrion	28.9	15.59

Protein Annotations

EnsemblPlants:CDX92018	EnsemblPlantsGene:GSBRNA2T00153676001	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3	PFAM:PF03478
ProteinID:CDX92018	ProteinID:CDX92018.1	UniParc:UPI0004EB55ED	MapMan:35.2	:	:

Description

BnaC03g33200D

Coordinates

chrLK031870:-:1271801..1274144

Molecular Weight (calculated)

43985.3 Da

IEP (calculated)

5.608

GRAVY (calculated)

-0.221

Length

391 amino acids

Sequence
(BLAST)

001: MFRFLQVGLA KPVRGSNSMQ TVVRSLSSLE GVTSSPYLLL PMEVVEDHGV DGKVVNLNYF DPMKNETVKV RNRTIPEKMC TPSSSYIGSS RGWVASMNTE
101: DMTVHVTNMF NPTVPKSSQR VISLPPFDPI IPYDSLPFNP RCPIGYGASL SSCPDRSQDS DSVTLALKWM DSISFCNLGN GSKWIHLQDS IPGHFCGSRV
201: FFSDRDSTFY LTPNVPFLPV RHPSPQFHQL AYYPQPTSLC RLPDISDTEY ELLRQCGPFN QMVQSPSGDL LLVIWFVQAT VGGNPISFWE QHKKKEGHVT
301: KRFMVFKVDS DNGCKSYTED IGDLCIFYGQ NELFCVNATN YPGLEPNSIY FVEFGDTGRI YIFDLATQTF TELAKLDNLT GPPYWLDPTF V

Best Arabidopsis Sequence Match ( AT1G68960.1 )
(BLAST)

001: MSQLLCRISK LSTSRNRILC FRRSEFSTVT AEATTPYLLL GSDLVGKSPC DGKVVNFNLY DPRKQEQVKI ENKILSKEVY ESHKLGSSRG WLALLNKKDS
101: TVRLTNILNP SKKIISLPSL TRDKYESHVN VSVSSSNEED CVVAVKFYGS RVSLCRPGDS EWTRIDVPCP SFHSSTVIYS ERDRRFYLNN CNPDYTGPTD
201: FTPKSGLHTP VSGYKRFLFS NFLEEMPELE NERRLSRFRI QQQLVESASG QSFIVAWFVE SLTDKGEVAT WGDTRYNNNK DLCKKTHKIM VIRQDEEQGI
301: GPYTDDIGDL CIFLGENESF CLSAKDFPGL NPNSVYFAGH GSGYGIWDLA SCTIRYLSDS TPPPGRMFWL PPTISQ

Arabidopsis Description

Uncharacterized protein T6L1.14 [Source:UniProtKB/TrEMBL;Acc:Q9CAA6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.