CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65207	Canola	mitochondrion	88.78	54.04
CDX95813	Canola	mitochondrion	83.16	51.75
CDY27327	Canola	cytosol	41.33	46.02
CDX86571	Canola	cytosol	14.8	33.72
AT5G03390.1	Thale cress	mitochondrion	48.98	25.74
CDY02744	Canola	mitochondrion	29.08	24.46
CDY71779	Canola	mitochondrion	43.88	24.43
CDY59993	Canola	cytosol, plastid	31.12	22.34
CDX95970	Canola	mitochondrion	40.82	21.62
CDY33565	Canola	plastid	41.84	21.58
CDY57750	Canola	plastid	37.76	19.84
CDX99887	Canola	extracellular, plasma membrane	34.69	19.15
CDY10120	Canola	mitochondrion	32.14	18.64
CDY41583	Canola	mitochondrion	21.94	18.61
CDX92018	Canola	mitochondrion	36.73	18.41
CDY15545	Canola	mitochondrion	31.12	18.32
CDX92019	Canola	mitochondrion	37.24	18.3
CDX86572	Canola	mitochondrion	16.33	18.08
CDY28820	Canola	cytosol	34.18	17.96
CDX83387	Canola	cytosol	33.16	17.96
CDY10119	Canola	mitochondrion	33.67	17.93
CDX95667	Canola	mitochondrion, plastid	34.69	17.85
CDX83388	Canola	plastid	34.69	17.75
CDY43323	Canola	mitochondrion	33.67	17.74
CDY47276	Canola	mitochondrion	33.16	17.66
CDX90173	Canola	mitochondrion	33.16	17.47
CDX86573	Canola	mitochondrion	32.14	17.36
CDX90231	Canola	mitochondrion	32.14	17.21
CDY15546	Canola	plastid	34.18	17.14
CDY65427	Canola	cytosol	16.84	17.1
CDY57749	Canola	mitochondrion	30.61	17.05
CDY51469	Canola	mitochondrion	31.63	16.94
CDX98187	Canola	mitochondrion	30.61	16.44
CDY47275	Canola	cytosol	32.14	16.41
CDX95668	Canola	mitochondrion	31.63	16.23
CDY51468	Canola	mitochondrion	29.59	16.11
CDY50787	Canola	cytosol	26.02	15.74
CDX90232	Canola	mitochondrion	28.57	15.73
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	30.1	15.45
CDX99797	Canola	plastid	29.08	15.24
CDX99796	Canola	mitochondrion	30.61	15.11
CDY53420	Canola	cytosol	25.51	14.88
CDX99886	Canola	cytosol	15.82	14.22
CDY48999	Canola	cytosol	26.53	13.4
CDY03244	Canola	cytosol	17.35	13.33
CDX94769	Canola	cytosol	25.0	13.14
CDY35144	Canola	mitochondrion	19.9	12.34
CDY10122	Canola	mitochondrion	34.18	9.24

Protein Annotations

EnsemblPlants:CDY23447	EnsemblPlantsGene:GSBRNA2T00022065001	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3	PFAM:PF03478
ProteinID:CDY23447	ProteinID:CDY23447.1	UniParc:UPI0004EE380C	UniProt:A0A078GEB7	MapMan:35.2	:

Description

BnaC04g49750DBnaC04g49750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEB7]

Coordinates

chrLK032143:+:517572..518604

Molecular Weight (calculated)

21670.0 Da

IEP (calculated)

8.265

GRAVY (calculated)

0.032

Length

196 amino acids

Sequence
(BLAST)

001: MFLFVGGIRK LRSFSTAAAQ PYLLVRERES LPTEVAKSLR IGSSKGWVAL TDLQNSKLRL TNLFNPCASS PTTITLPPVD GCYRGSAARV YNVSLSASPN
101: QRDCTCSDFP LVSFMVFKQD HGKKLCSYTQ DIGDLCIFLG KNESFCVSAT KYPGLVPNSV YFEGILNGFG FYELSSNTVH DLTPFSTFYL WLAPLE

Best Arabidopsis Sequence Match ( AT5G03390.1 )
(BLAST)

001: MSQLLGRTAK ISSVVKKQRL CFSELRSFST AATPYLLLKD TNYRAASGGS VVDINLYDPR KKEIVKIRDQ YLSEELQCTM KMGSSRGWIV AKTIYEPTLY
101: LTNIFNPCAS VSSHKVFNLP PLEDDAKARI SSISLSASPN QQDCVLAVKS SSSPFLSLWR PGDSAWTRIK VPFPASNVMM YSGRDRKFYL LPRESKEECE
201: GPIDLINTSS DDFPQVTLYQ RFPNSDIPVS RQEQLLSSIK TRYLVESPSG DSFIVYWCNE RSFYWKKGEV KPWTGKNPPP SRISCRLKTR TFVVFRQDSE
301: QGIGSYTEDI GDLCIFLGHR EAFCVSATEY PGLRPNSVYY ATSGTGFGYY DLSSNTLHDV IHEGLFSWIA PLQ

Arabidopsis Description

At5g03390 [Source:UniProtKB/TrEMBL;Acc:Q9LZF0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.