CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90173	Canola	mitochondrion	95.97	95.97
CDY57750	Canola	plastid	61.56	61.39
CDX86571	Canola	cytosol	13.44	58.14
CDY10120	Canola	mitochondrion	48.12	52.96
CDX86573	Canola	mitochondrion	50.0	51.24
CDY47275	Canola	cytosol	51.88	50.26
CDY57749	Canola	mitochondrion	47.31	50.0
CDY15545	Canola	mitochondrion	43.82	48.95
CDX90231	Canola	mitochondrion	47.58	48.36
CDY51469	Canola	mitochondrion	47.04	47.81
CDY50787	Canola	cytosol	40.86	46.91
CDX98187	Canola	mitochondrion	45.7	46.58
CDY10119	Canola	mitochondrion	45.97	46.47
CDY47276	Canola	mitochondrion	45.97	46.47
CDX99886	Canola	cytosol	27.15	46.33
CDX99797	Canola	plastid	45.97	45.72
CDX99796	Canola	mitochondrion	48.39	45.34
CDX86572	Canola	mitochondrion	20.97	44.07
CDX90232	Canola	mitochondrion	41.94	43.82
CDY51468	Canola	mitochondrion	41.4	42.78
CDX99887	Canola	extracellular, plasma membrane	40.05	41.97
CDX95667	Canola	mitochondrion, plastid	42.2	41.21
CDX83388	Canola	plastid	41.94	40.73
CDY15546	Canola	plastid	41.67	39.64
CDY59993	Canola	cytosol, plastid	27.96	38.1
CDX83387	Canola	cytosol	36.29	37.29
CDX95668	Canola	mitochondrion	37.9	36.91
CDY65427	Canola	cytosol	18.82	36.27
CDY02744	Canola	mitochondrion	21.77	34.76
CDY23447	Canola	mitochondrion	17.74	33.67
CDX94769	Canola	cytosol	32.26	32.17
CDX95970	Canola	mitochondrion	31.99	32.16
CDX95813	Canola	mitochondrion	27.15	32.06
CDY65207	Canola	mitochondrion	26.88	31.06
CDY48999	Canola	cytosol	32.26	30.93
CDY03244	Canola	cytosol	20.7	30.2
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	30.91	30.1
CDY33565	Canola	plastid	30.38	29.74
CDY71779	Canola	mitochondrion	27.96	29.55
CDY28820	Canola	cytosol	29.57	29.49
CDY53420	Canola	cytosol	26.34	29.17
CDY27327	Canola	cytosol	13.71	28.98
CDY41583	Canola	mitochondrion	17.47	28.14
CDY35144	Canola	mitochondrion	22.85	26.9
CDX92018	Canola	mitochondrion	28.23	26.85
CDX92019	Canola	mitochondrion	27.42	25.56
CDY10122	Canola	mitochondrion	49.19	25.24

Protein Annotations

EnsemblPlants:CDY43323	EnsemblPlantsGene:GSBRNA2T00076372001	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3	PFAM:PF03478
ProteinID:CDY43323	ProteinID:CDY43323.1	SEG:seg	UniParc:UPI0004EEF5DF	UniProt:A0A078I2G2	MapMan:35.2

Description

BnaC03g58950DBnaC03g58950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2G2]

Coordinates

chrLK032552:+:97865..99288

Molecular Weight (calculated)

42538.8 Da

IEP (calculated)

7.808

GRAVY (calculated)

-0.315

Length

372 amino acids

Sequence
(BLAST)

001: MSRSFIKLSP WSHALIRKRR FRLFSSSFTT PYLLLGTTLK NDLPDGSDVR DVLLFDPTKE EMLTVPNITF PEELAGSRQI GSARGWGIFS NDHDRSLCIS
101: DLYSSLGPKS TLTMIPLPSL VAVHSNQTNA VWNVAMSSSP SDQDCVVAIK LLDRQLSLCR PHSDMRWTNV GEILAENNLQ KLENSTLMYS KRERRFYLPG
201: PGGNSLYSWD LHLKKNKVPS FHELLFRDLP ELDDSEWKLL GWCCRTEHLV ELASSGERFL VKWYAQRFFS SSHEGSKYTT RRFMVFREKK MTEGRYMHYT
301: EDIGDVCIFI SMSEAFCVEA SSCSGLKPNS IYFIGHGFGI YNIVDTTIHH FQAPEGAPTS FKDPYWLPPS RI

Best Arabidopsis Sequence Match ( AT1G05540.1 )
(BLAST)

001: MSQLLFRLSK LSSRNNELIH KSVRLFSTSP YLTLGSVVED LPEEDGSYIG DILLFDPAKE ELVTVRDKTI PEKLVNSRVV GASHGWTFFS DRCNHNSVCI
101: SDLFTPMASK SNTKIIPLPL LTTMIYGQTE AVWNVAMSSS SPHQDNEEED CVVAINFLGS QLSVCRPGRD HGWTNKQIPF ICSENSNLMY SKRDQRFYLP
201: APGGNYLCSW DLHFDNDPKF NELVFLNLPE LPQSEWELLN SCFKEDHWVE SPSGQSFLVK WYSHIPSQRY KDPILMVLRE DEETEEGTRN MCYTEDIGDL
301: CIFLSKSDPF CVVASSCPGL KPNSIYLMGR CFAVYDLTTR TARHFKAPKG GPERVPFLPY WLPPFSI

Arabidopsis Description

T25N20.19 [Source:UniProtKB/TrEMBL;Acc:Q9ZVY4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.