CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15545	Canola	mitochondrion	82.49	43.84
CDX86573	Canola	mitochondrion	81.36	39.67
CDY10120	Canola	mitochondrion	62.15	32.54
AT1G05550.3	Thale cress	cytosol	62.15	28.57
CDY47275	Canola	cytosol	61.02	28.12
CDY47276	Canola	mitochondrion	55.93	26.9
CDY10119	Canola	mitochondrion	54.8	26.36
CDY57749	Canola	mitochondrion	48.59	24.43
CDY57750	Canola	plastid	51.41	24.4
CDX99797	Canola	plastid	49.15	23.26
CDX98187	Canola	mitochondrion	47.46	23.01
CDY50787	Canola	cytosol	41.81	22.84
CDX99796	Canola	mitochondrion	50.85	22.67
CDX99887	Canola	extracellular, plasma membrane	45.2	22.54
CDY41583	Canola	mitochondrion	29.38	22.51
CDY51468	Canola	mitochondrion	45.2	22.22
CDX90232	Canola	mitochondrion	44.63	22.19
CDY51469	Canola	mitochondrion	44.63	21.58
CDX90231	Canola	mitochondrion	44.63	21.58
CDX90173	Canola	mitochondrion	44.07	20.97
CDY43323	Canola	mitochondrion	44.07	20.97
CDY15546	Canola	plastid	44.07	19.95
CDY02744	Canola	mitochondrion	25.42	19.31
CDY71779	Canola	mitochondrion	34.46	17.33
CDX95667	Canola	mitochondrion, plastid	35.59	16.54
CDX83388	Canola	plastid	35.59	16.45
CDY23447	Canola	mitochondrion	18.08	16.33
CDX95970	Canola	mitochondrion	32.77	15.68
CDY33565	Canola	plastid	33.33	15.53
CDX95813	Canola	mitochondrion	27.12	15.24
CDX83387	Canola	cytosol	31.07	15.19
CDX95668	Canola	mitochondrion	32.2	14.92
CDY65207	Canola	mitochondrion	27.12	14.91
CDY28820	Canola	cytosol	31.07	14.75
CDY10122	Canola	mitochondrion	57.63	14.07
CDY03244	Canola	cytosol	19.21	13.33
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	27.68	12.83
CDX92018	Canola	mitochondrion	27.68	12.53
CDY59993	Canola	cytosol, plastid	18.64	12.09
CDX92019	Canola	mitochondrion	25.99	11.53
CDX99886	Canola	cytosol	13.56	11.01
CDX94769	Canola	cytosol	20.34	9.65
CDY48999	Canola	cytosol	20.9	9.54
CDY53420	Canola	cytosol	16.38	8.63
CDY35144	Canola	mitochondrion	13.56	7.59
CDY65427	Canola	cytosol	1.69	1.55
CDY27327	Canola	cytosol	0.56	0.57
CDX86571	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX86572	EnsemblPlantsGene:GSBRNA2T00145199001	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3	ProteinID:CDX86572	ProteinID:CDX86572.1
SEG:seg	UniParc:UPI0004EE7BBF	MapMan:35.2	:	:	:

Description

BnaC08g01310D

Coordinates

chrLK031846:-:733210..734154

Molecular Weight (calculated)

19924.1 Da

IEP (calculated)

8.330

GRAVY (calculated)

-0.167

Length

177 amino acids

Sequence
(BLAST)

001: MSRRIIRLSK LSSRNNNVFI QKCVRFFSTG PYLTLGCNTG DVLLFDPAKE QIVTLHGKTI PKELKDEGMI GASHGWVFFS DRRDRTVRVS DIYNSFASKS
101: NPSVIPLPCL TDLPCEQIEQ VCNVAMSSSS PLEKDCLVAI KFSGDQLSLC RPGRDLEWIN ILTPFHCCEN SNLIRPR

Best Arabidopsis Sequence Match ( AT1G05540.2 )
(BLAST)

001: MSQLLFRLSK LSSRNNELIH KSVRLFSTSP YLTLGSVVED LPEEDGSYIG DILLFDPAKE ELVTVRDKTI PEKLVNSRVV GASHGWTFFS DRCNHNSVCI
101: SDLFTPMASK SNTKIIPLPL LTTMIYGQTE AVWNVAMSSS SPHQDNEEED CVVAINFLGS QLSVCRPGRD HGWTNKQIPF ICSENSNLMY SKRDQRFYLP
201: APGGNYLCSW DLHFDNDPKF NELVFLNLPE LPQSEWELLN SCFKEDHWVE SPSGQSFLVK W

Arabidopsis Description

T25N20.19 [Source:UniProtKB/TrEMBL;Acc:Q9ZVY4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.