CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50787	Canola	cytosol	80.48	92.9
CDX86571	Canola	cytosol	13.64	59.3
CDX99886	Canola	cytosol	31.28	53.67
CDY10119	Canola	mitochondrion	52.14	52.99
CDY47276	Canola	mitochondrion	51.07	51.9
CDX90232	Canola	mitochondrion	49.2	51.69
CDY10120	Canola	mitochondrion	46.52	51.48
CDY51468	Canola	mitochondrion	48.13	50.0
CDY57749	Canola	mitochondrion	46.52	49.43
CDX86572	Canola	mitochondrion	23.26	49.15
CDY51469	Canola	mitochondrion	47.33	48.36
CDX90231	Canola	mitochondrion	47.33	48.36
CDX99796	Canola	mitochondrion	50.8	47.86
CDX86573	Canola	mitochondrion	45.72	47.11
CDX98187	Canola	mitochondrion	45.72	46.85
CDY47275	Canola	cytosol	47.86	46.61
CDY15545	Canola	mitochondrion	41.44	46.55
CDY57750	Canola	plastid	46.26	46.38
CDY15546	Canola	plastid	48.4	46.29
CDY43323	Canola	mitochondrion	45.72	45.97
CDX90173	Canola	mitochondrion	45.72	45.97
CDY65427	Canola	cytosol	22.73	44.04
CDX99887	Canola	extracellular, plasma membrane	41.44	43.66
CDX83388	Canola	plastid	41.71	40.73
CDX95667	Canola	mitochondrion, plastid	39.84	39.11
CDX95668	Canola	mitochondrion	38.5	37.7
CDX83387	Canola	cytosol	35.03	36.19
CDY59993	Canola	cytosol, plastid	26.2	35.9
CDY27327	Canola	cytosol	14.97	31.82
CDY02744	Canola	mitochondrion	19.25	30.9
CDX94769	Canola	cytosol	30.75	30.83
CDX95813	Canola	mitochondrion	25.94	30.79
CDY65207	Canola	mitochondrion	25.94	30.12
CDY48999	Canola	cytosol	31.02	29.9
CDY28820	Canola	cytosol	29.41	29.49
CDY10122	Canola	mitochondrion	56.42	29.1
CDY23447	Canola	mitochondrion	15.24	29.08
CDY71779	Canola	mitochondrion	27.27	28.98
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	29.14	28.53
CDY03244	Canola	cytosol	18.98	27.84
CDX95970	Canola	mitochondrion	27.54	27.84
CDY53420	Canola	cytosol	24.87	27.68
CDX92018	Canola	mitochondrion	28.88	27.62
CDY33565	Canola	plastid	27.81	27.37
CDX92019	Canola	mitochondrion	27.27	25.56
CDY41583	Canola	mitochondrion	15.78	25.54
CDY35144	Canola	mitochondrion	20.59	24.37

Protein Annotations

EnsemblPlants:CDX99797	EnsemblPlantsGene:GSBRNA2T00108479001	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3	PFAM:PF03478
ProteinID:CDX99797	ProteinID:CDX99797.1	SEG:seg	UniParc:UPI0004EE94B0	MapMan:35.2	:

Description

BnaC05g22190D

Coordinates

chrLK031914:-:125361..126704

Molecular Weight (calculated)

42137.5 Da

IEP (calculated)

6.865

GRAVY (calculated)

-0.122

Length

374 amino acids

Sequence
(BLAST)

001: MSHLLLSRLS NLSPSGHSLL HKTIRLFSSS STSPCFPLCV VEKDSPGNGG MVGDVHLFDA ATEGLVTVTD KTIPEVITNG GIVVGASHGW LFFKDRHDHS
101: VYVTDFYNSL AFKTNATMIP MPTFTALHLC QTEVVWNVAM STSPGQQEDE DDWVVGIKFL GNQLSFCRPR RDLRWTNVSS PFKMFNNSNL MFSKRDKTFN
201: LPAPVGNYLC SWDIQFHKDG YPAPKIHKLL FHNLPQLPQS MWELLDSCPR EDHWVESPSG ESFLVKWYSR VSLSPSLSTL PIVMVFREED RKDGIIKMCY
301: TEDIGDICIF LSKSEAFCVP ASSCPGLKPN SIYVADRVFS VYDLTTKTFH HFKYPIDAPE KISRVPCWLP PVSV

Best Arabidopsis Sequence Match ( AT1G05540.1 )
(BLAST)

001: MSQLLFRLSK LSSRNNELIH KSVRLFSTSP YLTLGSVVED LPEEDGSYIG DILLFDPAKE ELVTVRDKTI PEKLVNSRVV GASHGWTFFS DRCNHNSVCI
101: SDLFTPMASK SNTKIIPLPL LTTMIYGQTE AVWNVAMSSS SPHQDNEEED CVVAINFLGS QLSVCRPGRD HGWTNKQIPF ICSENSNLMY SKRDQRFYLP
201: APGGNYLCSW DLHFDNDPKF NELVFLNLPE LPQSEWELLN SCFKEDHWVE SPSGQSFLVK WYSHIPSQRY KDPILMVLRE DEETEEGTRN MCYTEDIGDL
301: CIFLSKSDPF CVVASSCPGL KPNSIYLMGR CFAVYDLTTR TARHFKAPKG GPERVPFLPY WLPPFSI

Arabidopsis Description

T25N20.19 [Source:UniProtKB/TrEMBL;Acc:Q9ZVY4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.