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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plasma membrane 3
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • golgi 2
  • plastid 1
  • peroxisome 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra022671.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 100.0 100.0
AT5G53780.1 Thale cress cytosol 56.54 57.45
CDY28820 Canola cytosol 39.27 40.21
CDY59993 Canola cytosol, plastid 26.18 36.63
CDX86571 Canola cytosol 8.12 36.05
CDY10119 Canola mitochondrion 33.51 34.78
CDY02744 Canola mitochondrion 20.94 34.33
CDY47276 Canola mitochondrion 32.72 33.97
CDY10120 Canola mitochondrion 29.06 32.84
CDY57750 Canola plastid 30.89 31.64
CDX86573 Canola mitochondrion 29.84 31.41
CDX99886 Canola cytosol 17.8 31.19
CDY15545 Canola mitochondrion 26.96 30.93
CDY43323 Canola mitochondrion 30.1 30.91
CDY47275 Canola cytosol 30.63 30.47
CDX95970 Canola mitochondrion 29.32 30.27
CDX98187 Canola mitochondrion 28.8 30.14
CDX90173 Canola mitochondrion 29.32 30.11
CDY23447 Canola mitochondrion 15.45 30.1
CDY71779 Canola mitochondrion 27.23 29.55
CDY57749 Canola mitochondrion 27.23 29.55
CDY33565 Canola plastid 29.32 29.47
CDY41583 Canola mitochondrion 17.8 29.44
CDX99797 Canola plastid 28.53 29.14
CDY50787 Canola cytosol 24.61 29.01
CDY51469 Canola mitochondrion 27.75 28.96
CDX83388 Canola plastid 28.8 28.72
CDX99796 Canola mitochondrion 29.84 28.72
CDX90231 Canola mitochondrion 27.49 28.69
CDX92018 Canola mitochondrion 28.8 28.13
CDX95667 Canola mitochondrion, plastid 27.75 27.82
CDX90232 Canola mitochondrion 25.92 27.81
CDX86572 Canola mitochondrion 12.83 27.68
CDX83387 Canola cytosol 25.92 27.35
CDY27327 Canola cytosol 12.57 27.27
CDY51468 Canola mitochondrion 25.65 27.22
CDX99887 Canola extracellular, plasma membrane 25.13 27.04
CDX95813 Canola mitochondrion 21.99 26.67
CDX95668 Canola mitochondrion 26.44 26.44
CDY65207 Canola mitochondrion 21.99 26.09
CDY15546 Canola plastid 26.18 25.58
CDX92019 Canola mitochondrion 25.65 24.56
CDY53420 Canola cytosol 21.47 24.4
CDY65427 Canola cytosol 12.04 23.83
CDX94769 Canola cytosol 21.99 22.52
CDY48999 Canola cytosol 22.77 22.42
CDY03244 Canola cytosol 14.92 22.35
CDY35144 Canola mitochondrion 16.75 20.25
CDY10122 Canola mitochondrion 31.68 16.69
Protein Annotations
EnsemblPlants:CDY28818EnsemblPlantsGene:GSBRNA2T00041480001InterPro:DUF295PANTHER:PTHR31681PANTHER:PTHR31681:SF3PFAM:PF03478
ProteinID:CDY28818ProteinID:CDY28818.1SEG:segUniParc:UPI0002546A40UniProt:A0A078GVZ2MapMan:35.2
Description
BnaA02g10100DBnaA02g10100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVZ2]
Coordinates
chrLK032226:-:468888..470181
Molecular Weight (calculated)
43722.8 Da
IEP (calculated)
6.111
GRAVY (calculated)
-0.068
Length
382 amino acids
Sequence
(BLAST)
001: MSWNLEEFGV ASWTTMSLLF NQFVELFVDE EGEEDHKARF VFASSPQKQT PYMILEGDKV GESSSEAEKI VMNFKLLDLR KEEIIEVTHK TFPKLLYEGS
101: RVIGSSRGWT AFMSKHDGTV YLSNVFNLAF SRVIALPSLS DPLRLRSTAI VNVSISSPPD QDDGYVVFVK FLGSNLYYCR PDRVSQWTQM DIEGSHVNLC
201: DVIYSPRNQM LFLVIIGASY LLSFDVNMER RYTILNLRNL PKMPQSEWEM LALCCKSEHM VEAPCGKCFI VRRYVETYDN NGIIFKKTKR FMVFLLDKKV
301: KDGEITARYT KDIGDLCIFF GTNETFCVEA SKYHGLNPNS IYYIGYGLGV YDIGSGIFYH FPSYMPLNSP LCLLPILSNP HV
Best Arabidopsis Sequence Match ( AT5G53780.1 )
(BLAST)
001: MLSILVQRKN EDKFGFKSNS FHEQSQVEEE ESDHKAARFF SSSPKQTPYM VLVGDKVGES PEAENIIMSF KLFDLSKEEI IEVIHKSFPK LLYQDSRVIG
101: SSRGWIAFMS KHDGTVHLSD VFNLGSLRVI TLPPLPDPMY DPSRVIINVS LSYPPDQEDD YVVYIKFLCS DIYLCRPNHH SQWVGCDGNE IHTTASDIVY
201: SPRNQMLFLV IMGASFLCSF DLNMNKKYTR LHLRNIPMMP QSEWELLAMC IKIEHLVESP GGRIFVVKQY VETYDQGDKE VIFNKTKRFM VFKLNTKATD
301: GEIAAYYTED IGDLCIFFGN NETLCLEASN NPGLKPNYIY YIGYGLGFYD MSSQKVHHFT SSMPLNWPLY LLPGLI
Arabidopsis Description
F-box protein, putative (DUF295) [Source:UniProtKB/TrEMBL;Acc:Q9FHZ8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.