CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71779	Canola	mitochondrion	88.31	57.95
CDX95970	Canola	mitochondrion	52.81	32.97
CDY33565	Canola	plastid	53.25	32.37
CDX86572	Canola	mitochondrion	22.51	29.38
CDX95813	Canola	mitochondrion	31.17	22.86
CDY23447	Canola	mitochondrion	18.61	21.94
CDY65207	Canola	mitochondrion	30.3	21.74
CDY10120	Canola	mitochondrion	30.3	20.71
CDX86573	Canola	mitochondrion	31.6	20.11
CDY10119	Canola	mitochondrion	31.6	19.84
CDY57749	Canola	mitochondrion	29.44	19.32
CDY15545	Canola	mitochondrion	27.71	19.22
CDY47276	Canola	mitochondrion	30.3	19.02
CDX92018	Canola	mitochondrion	31.6	18.67
CDY47275	Canola	cytosol	30.74	18.49
CDY02744	Canola	mitochondrion	18.61	18.45
CDY57750	Canola	plastid	29.44	18.23
CDX92019	Canola	mitochondrion	31.17	18.05
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	29.44	17.8
CDX98187	Canola	mitochondrion	27.71	17.53
CDX90173	Canola	mitochondrion	28.14	17.47
CDY43323	Canola	mitochondrion	28.14	17.47
CDY51469	Canola	mitochondrion	27.27	17.21
CDX90231	Canola	mitochondrion	26.84	16.94
CDY28820	Canola	cytosol	27.27	16.89
CDX83388	Canola	plastid	27.71	16.71
CDY59993	Canola	cytosol, plastid	19.48	16.48
CDX90232	Canola	mitochondrion	25.11	16.29
CDY51468	Canola	mitochondrion	25.11	16.11
CDY03244	Canola	cytosol	17.75	16.08
CDY27327	Canola	cytosol	12.12	15.91
CDX99797	Canola	plastid	25.54	15.78
CDX95667	Canola	mitochondrion, plastid	25.11	15.22
CDX99887	Canola	extracellular, plasma membrane	22.51	14.65
CDY15546	Canola	plastid	24.24	14.32
CDX83387	Canola	cytosol	22.08	14.09
CDY50787	Canola	cytosol	19.48	13.89
CDX99796	Canola	mitochondrion	23.81	13.85
CDX95668	Canola	mitochondrion	21.64	13.09
CDX99886	Canola	cytosol	12.12	12.84
CDY53420	Canola	cytosol	17.75	12.2
CDX94769	Canola	cytosol	19.05	11.8
CDY48999	Canola	cytosol	19.05	11.34
CDY10122	Canola	mitochondrion	34.2	10.9
CDY35144	Canola	mitochondrion	14.72	10.76
CDY65427	Canola	cytosol	8.66	10.36
CDX86571	Canola	cytosol	0.87	2.33

Protein Annotations

EnsemblPlants:CDY41583	EnsemblPlantsGene:GSBRNA2T00073229001	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3	ProteinID:CDY41583	ProteinID:CDY41583.1
UniParc:UPI0004EAFB32	UniProt:A0A078HXY0	MapMan:35.2	:	:	:

Description

BnaC05g43200DBnaC05g43200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXY0]

Coordinates

chrLK032501:+:69619..70631

Molecular Weight (calculated)

25969.9 Da

IEP (calculated)

9.167

GRAVY (calculated)

-0.380

Length

231 amino acids

Sequence
(BLAST)

001: MSQLFGRISK LSSALNRRSF STTPYLYLGR EVVGESPCGG NVVNFNLYDP RKEEQAVIEN QTLSKHLCES SRIGSSRGWL AMMNKRDSTV RLTNILNNNP
101: SKTISLPRLI KDETERLIYV SVSSNDHGCV AVASARSDGS RLIFRLSPVM YSDRDRKFYV NSCSSDYTGP TNFTAKYGPV NAYVRYPLSN SPKLDLRRLN
201: IHQLFVQSPS GESFIVLWCL DCMTDKGEAV E

Best Arabidopsis Sequence Match ( AT1G68960.1 )
(BLAST)

001: MSQLLCRISK LSTSRNRILC FRRSEFSTVT AEATTPYLLL GSDLVGKSPC DGKVVNFNLY DPRKQEQVKI ENKILSKEVY ESHKLGSSRG WLALLNKKDS
101: TVRLTNILNP SKKIISLPSL TRDKYESHVN VSVSSSNEED CVVAVKFYGS RVSLCRPGDS EWTRIDVPCP SFHSSTVIYS ERDRRFYLNN CNPDYTGPTD
201: FTPKSGLHTP VSGYKRFLFS NFLEEMPELE NERRLSRFRI QQQLVESASG QSFIVAWFVE SLTDKGEVAT WGDTRYNNNK DLCKKTHKIM VIRQDEEQGI
301: GPYTDDIGDL CIFLGENESF CLSAKDFPGL NPNSVYFAGH GSGYGIWDLA SCTIRYLSDS TPPPGRMFWL PPTISQ

Arabidopsis Description

Uncharacterized protein T6L1.14 [Source:UniProtKB/TrEMBL;Acc:Q9CAA6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.