CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27327	Canola	cytosol	54.6	97.73
CDY65207	Canola	mitochondrion	86.98	85.09
CDY23447	Canola	mitochondrion	51.75	83.16
AT5G03390.1	Thale cress	mitochondrion	51.11	43.16
CDY71779	Canola	mitochondrion	40.95	36.65
CDY59993	Canola	cytosol, plastid	30.79	35.53
CDX95970	Canola	mitochondrion	39.68	33.78
CDX86571	Canola	cytosol	9.21	33.72
CDY33565	Canola	plastid	40.63	33.68
CDY41583	Canola	mitochondrion	22.86	31.17
CDY10120	Canola	mitochondrion	33.33	31.07
CDY57750	Canola	plastid	36.19	30.56
CDY65427	Canola	cytosol	18.41	30.05
CDX90231	Canola	mitochondrion	34.29	29.51
CDY51469	Canola	mitochondrion	33.65	28.96
CDY47275	Canola	cytosol	35.24	28.91
CDX86573	Canola	mitochondrion	33.02	28.65
CDX99886	Canola	cytosol	19.68	28.44
CDY57749	Canola	mitochondrion	31.75	28.41
CDY10119	Canola	mitochondrion	33.02	28.26
CDX99887	Canola	extracellular, plasma membrane	31.75	28.17
CDX95667	Canola	mitochondrion, plastid	33.97	28.08
CDY47276	Canola	mitochondrion	32.38	27.72
CDX83387	Canola	cytosol	31.75	27.62
CDX98187	Canola	mitochondrion	31.75	27.4
CDY28820	Canola	cytosol	32.38	27.35
CDY15545	Canola	mitochondrion	28.89	27.33
CDY50787	Canola	cytosol	27.94	27.16
CDX83388	Canola	plastid	33.02	27.15
CDX90173	Canola	mitochondrion	32.06	27.15
CDY43323	Canola	mitochondrion	32.06	27.15
CDX86572	Canola	mitochondrion	15.24	27.12
CDY51468	Canola	mitochondrion	30.79	26.94
CDX90232	Canola	mitochondrion	30.16	26.69
CDY02744	Canola	mitochondrion	19.68	26.61
CDX92018	Canola	mitochondrion	33.02	26.6
CDY15546	Canola	plastid	32.7	26.34
CDX92019	Canola	mitochondrion	33.33	26.32
CDX99796	Canola	mitochondrion	32.7	25.94
CDX99797	Canola	plastid	30.79	25.94
CDX95668	Canola	mitochondrion	30.79	25.39
CDY03244	Canola	cytosol	18.73	23.14
CDX94769	Canola	cytosol	26.67	22.52
CDY48999	Canola	cytosol	27.3	22.16
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	26.67	21.99
CDY53420	Canola	cytosol	22.54	21.13
CDY35144	Canola	mitochondrion	19.68	19.62
CDY10122	Canola	mitochondrion	35.24	15.31

Protein Annotations

EnsemblPlants:CDX95813	EnsemblPlantsGene:GSBRNA2T00101759001	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3	PFAM:PF03478
ProteinID:CDX95813	ProteinID:CDX95813.1	UniParc:UPI0004EF2DE6	MapMan:35.2	:	:

Description

BnaC05g35640D

Coordinates

chrLK031891:-:458608..459716

Molecular Weight (calculated)

35148.0 Da

IEP (calculated)

7.990

GRAVY (calculated)

-0.163

Length

315 amino acids

Sequence
(BLAST)

001: MMFLLVGGTR KLRWFSTAAA QPYLLVRERE TLPTEVGKSL RIGSSKGWVA LTDLQNSKLR LTNLFNPCAS SPTTITLPPL DGSVARVSKV SLSASPNQRD
101: CVVAAKLFAP LVSLCRPGDS EWTHIETPNN FFTSAVMHSM RDQKFYLHSP DTAPTDLIKT CSDFPPVSPY RRFPFSDIPK TTQDLYQSSI FRTQYLVESP
201: SGDSFIVIWC MAGGKMEKET SRLMCDTKGF MVFKQDHGKK LSSYTQDIGD LCIFLGKNES FCVSATKYPG LNPNSVYFEG SETGFGFYEL SSNTVHDLTH
301: LAPFSAFYLW LAPLE

Best Arabidopsis Sequence Match ( AT5G03390.1 )
(BLAST)

001: MSQLLGRTAK ISSVVKKQRL CFSELRSFST AATPYLLLKD TNYRAASGGS VVDINLYDPR KKEIVKIRDQ YLSEELQCTM KMGSSRGWIV AKTIYEPTLY
101: LTNIFNPCAS VSSHKVFNLP PLEDDAKARI SSISLSASPN QQDCVLAVKS SSSPFLSLWR PGDSAWTRIK VPFPASNVMM YSGRDRKFYL LPRESKEECE
201: GPIDLINTSS DDFPQVTLYQ RFPNSDIPVS RQEQLLSSIK TRYLVESPSG DSFIVYWCNE RSFYWKKGEV KPWTGKNPPP SRISCRLKTR TFVVFRQDSE
301: QGIGSYTEDI GDLCIFLGHR EAFCVSATEY PGLRPNSVYY ATSGTGFGYY DLSSNTLHDV IHEGLFSWIA PLQ

Arabidopsis Description

At5g03390 [Source:UniProtKB/TrEMBL;Acc:Q9LZF0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.