CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020431.1-P	Field mustard	mitochondrion	98.53	74.52
CDX86571	Canola	cytosol	14.29	45.35
AT5G55440.1	Thale cress	mitochondrion	58.24	43.56
CDX99886	Canola	cytosol	30.77	38.53
CDY65427	Canola	cytosol	24.54	34.72
CDY27327	Canola	cytosol	21.98	34.09
CDY23447	Canola	mitochondrion	22.34	31.12
CDX95813	Canola	mitochondrion	35.53	30.79
CDY65207	Canola	mitochondrion	35.9	30.43
CDY10119	Canola	mitochondrion	40.66	30.16
CDY10120	Canola	mitochondrion	37.0	29.88
CDY50787	Canola	cytosol	35.16	29.63
CDY02744	Canola	mitochondrion	25.27	29.61
CDY47276	Canola	mitochondrion	39.56	29.35
CDY57749	Canola	mitochondrion	37.36	28.98
CDY57750	Canola	plastid	39.56	28.95
CDY43323	Canola	mitochondrion	38.1	27.96
CDX98187	Canola	mitochondrion	37.36	27.95
CDY47275	Canola	cytosol	39.19	27.86
CDX90173	Canola	mitochondrion	37.73	27.69
CDX90231	Canola	mitochondrion	37.0	27.6
CDX90232	Canola	mitochondrion	35.9	27.53
CDX99796	Canola	mitochondrion	39.93	27.46
CDY28820	Canola	cytosol	37.36	27.35
CDY51469	Canola	mitochondrion	36.63	27.32
CDX83388	Canola	plastid	38.1	27.15
CDY15545	Canola	mitochondrion	32.97	27.03
CDX86573	Canola	mitochondrion	35.9	27.0
CDY51468	Canola	mitochondrion	35.53	26.94
CDY15546	Canola	plastid	38.46	26.85
CDX99797	Canola	plastid	35.9	26.2
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	36.63	26.18
CDX95667	Canola	mitochondrion, plastid	36.26	25.98
CDX83387	Canola	cytosol	33.7	25.41
CDY71779	Canola	mitochondrion	32.6	25.28
CDX95970	Canola	mitochondrion	34.07	25.14
CDX99887	Canola	extracellular, plasma membrane	31.14	23.94
CDX95668	Canola	mitochondrion	33.33	23.82
CDY33565	Canola	plastid	32.97	23.68
CDX94769	Canola	cytosol	31.5	23.06
CDY48999	Canola	cytosol	31.87	22.42
CDY53420	Canola	cytosol	27.47	22.32
CDX92018	Canola	mitochondrion	31.87	22.25
CDX92019	Canola	mitochondrion	31.87	21.8
CDY03244	Canola	cytosol	19.05	20.39
CDY35144	Canola	mitochondrion	23.08	19.94
CDY41583	Canola	mitochondrion	16.48	19.48
CDX86572	Canola	mitochondrion	12.09	18.64
CDY10122	Canola	mitochondrion	42.86	16.14

Protein Annotations

EnsemblPlants:CDY59993	EnsemblPlantsGene:GSBRNA2T00028014001	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3	PFAM:PF03478
ProteinID:CDY59993	ProteinID:CDY59993.1	UniParc:UPI0004EDF6E9	UniProt:A0A078J8V6	MapMan:35.2	:

Description

BnaA02g35280DBnaA02g35280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J8V6]

Coordinates

chrLK033830:-:12125..12946

Molecular Weight (calculated)

30962.7 Da

IEP (calculated)

8.002

GRAVY (calculated)

-0.390

Length

273 amino acids

Sequence
(BLAST)

001: MDKKDSSLHL TDLCKPWVSS SPRVMSLPSL GFDPCVTVKQ VSLSSSSPDE CTVAANFSES QLSVCRTNCD SSWTHFKTPF PLLQASDLMY SKRDNAFYFA
101: SNKGLYMGSL HLSSNKLKYQ ELRFSSLPKF PEAEWEMLDT CFMSKHFVES PSGELFFVKW YRQFLHKENN NNGRREVEDI HSKTRRFMVF RQDDNTKALS
201: YTQDIGDLCI FLGKSEAFCL SASLYPGLKP NSIYYIGSGL GSYHLPSGTV RPYNPLGSPK TLHAPFWLDP ISS

Best Arabidopsis Sequence Match ( AT5G55440.1 )
(BLAST)

001: MALFFSRISK LSGRRNNARF FSSLPPSPCL VLTTKKLRGS PEEGLIVHHK LFEPATEKKV YGNEKKYPKE LHGAPLLGAS KGWVAFFKEK DISVHLTDLY
101: KPCVSSPRVI SLPSLKLDYK PATHATEVCL SSSDPVQDDY YVAAKFNDYH VSVCRPRWDS DWTHNETGYS LLPASELMYS KRDKAFHFTS FKGLYMGSLY
201: LSKKDEIKYK EIRLRNLPKI PEAGWEMLDK CSMTNHLVDS PSGELFFIKW YTQCIHKEDE DGDLECLHSK TKRFMVFRQD GMSKDFGYTE DIGDLCIFLG
301: KSEAFCVTAS LYPGLKPNSI YYLGPRFGSY DLASGTNSSF TFDRFGKPSL VVPYWIHSTS SLSSS

Arabidopsis Description

F-box protein, putative (DUF295) [Source:UniProtKB/TrEMBL;Acc:Q9FJ66]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.