CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10120	Canola	mitochondrion	44.84	52.66
CDY50787	Canola	cytosol	42.32	51.85
CDY51469	Canola	mitochondrion	47.36	51.37
CDX86571	Canola	cytosol	11.08	51.16
CDX86572	Canola	mitochondrion	22.67	50.85
CDX99797	Canola	plastid	47.86	50.8
CDX90231	Canola	mitochondrion	46.6	50.55
CDY15545	Canola	mitochondrion	42.07	50.15
CDX86573	Canola	mitochondrion	45.84	50.14
CDY47275	Canola	cytosol	48.36	50.0
CDY57750	Canola	plastid	46.6	49.6
CDX90173	Canola	mitochondrion	45.34	48.39
CDY43323	Canola	mitochondrion	45.34	48.39
CDY57749	Canola	mitochondrion	42.07	47.44
CDX99887	Canola	extracellular, plasma membrane	41.81	46.76
CDY47276	Canola	mitochondrion	43.32	46.74
CDY10119	Canola	mitochondrion	42.82	46.2
CDX99886	Canola	cytosol	25.19	45.87
CDX98187	Canola	mitochondrion	40.3	43.84
CDX90232	Canola	mitochondrion	38.54	42.98
CDY15546	Canola	plastid	42.07	42.71
CDY51468	Canola	mitochondrion	38.54	42.5
CDX83388	Canola	plastid	39.04	40.47
CDX95667	Canola	mitochondrion, plastid	38.54	40.16
CDY59993	Canola	cytosol, plastid	27.46	39.93
CDX95668	Canola	mitochondrion	37.28	38.74
CDX83387	Canola	cytosol	34.26	37.57
CDY65427	Canola	cytosol	17.88	36.79
CDX95813	Canola	mitochondrion	25.94	32.7
CDX94769	Canola	cytosol	30.48	32.44
CDY02744	Canola	mitochondrion	18.89	32.19
CDY03244	Canola	cytosol	20.4	31.76
CDY48999	Canola	cytosol	30.98	31.7
CDY65207	Canola	mitochondrion	25.44	31.37
CDY28820	Canola	cytosol	29.22	31.1
CDY23447	Canola	mitochondrion	15.11	30.61
CDY27327	Canola	cytosol	13.35	30.11
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	28.72	29.84
CDX95970	Canola	mitochondrion	27.2	29.19
CDY33565	Canola	plastid	26.95	28.16
CDY53420	Canola	cytosol	23.17	27.38
CDY10122	Canola	mitochondrion	48.87	26.76
CDY71779	Canola	mitochondrion	23.68	26.7
CDX92018	Canola	mitochondrion	25.94	26.34
CDY35144	Canola	mitochondrion	20.4	25.63
CDX92019	Canola	mitochondrion	24.94	24.81
CDY41583	Canola	mitochondrion	13.85	23.81

Protein Annotations

EnsemblPlants:CDX99796	EnsemblPlantsGene:GSBRNA2T00108478001	GO:A0A078EF97	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3
PFAM:PF03478	ProteinID:CDX99796	ProteinID:CDX99796.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EC802F
MapMan:35.2	:	:	:	:	:

Description

BnaC05g22180D

Coordinates

chrLK031914:-:122148..124300

Molecular Weight (calculated)

44779.4 Da

IEP (calculated)

5.270

GRAVY (calculated)

-0.184

Length

397 amino acids

Sequence
(BLAST)

001: MSQLLLQRLS KFSPRNSSLI YEKARRVLSS SAATNPYVSL EISADLNEGG GTIIGSVLLF DAAKQDVLTV EKTIPEEMIV EGKGVGASHG WLFMEDQRDR
101: SLSVTDVLNP LASKRETTVI PLPPLASLQL CQSKVGWNVA MSSSPPDEDD EDDWVVAIKF LGGQLSLCRP RRDLRWTNIQ TPLLGYLDNS NLMYSKRDQC
201: FYLPSPGGHH LFSYDIKDKD HPNPKFHVLQ FRDLPELPQS EWEILVSSCY RTEYLVESAS TGEHFLVKRY LYLFLTLLAT FVINFVTETS FLRYIQTYLK
301: NGQDYKTKQF MVFREEETLE GGRYMCYTDN IGDVCIFLSS SEAFCVQASS FPGLKPNSIY YIGQGFGIYN ITNGNSTPFQ GAPAKLSASF WLPPFSI

Best Arabidopsis Sequence Match ( AT1G05540.1 )
(BLAST)

001: MSQLLFRLSK LSSRNNELIH KSVRLFSTSP YLTLGSVVED LPEEDGSYIG DILLFDPAKE ELVTVRDKTI PEKLVNSRVV GASHGWTFFS DRCNHNSVCI
101: SDLFTPMASK SNTKIIPLPL LTTMIYGQTE AVWNVAMSSS SPHQDNEEED CVVAINFLGS QLSVCRPGRD HGWTNKQIPF ICSENSNLMY SKRDQRFYLP
201: APGGNYLCSW DLHFDNDPKF NELVFLNLPE LPQSEWELLN SCFKEDHWVE SPSGQSFLVK WYSHIPSQRY KDPILMVLRE DEETEEGTRN MCYTEDIGDL
301: CIFLSKSDPF CVVASSCPGL KPNSIYLMGR CFAVYDLTTR TARHFKAPKG GPERVPFLPY WLPPFSI

Arabidopsis Description

T25N20.19 [Source:UniProtKB/TrEMBL;Acc:Q9ZVY4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.