CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92018	Canola	mitochondrion	73.18	74.68
CDY23447	Canola	mitochondrion	18.3	37.24
CDX86571	Canola	cytosol	8.02	37.21
CDY71779	Canola	mitochondrion	29.57	33.52
CDX95813	Canola	mitochondrion	26.32	33.33
CDY02744	Canola	mitochondrion	19.3	33.05
CDY27327	Canola	cytosol	14.29	32.39
CDY65207	Canola	mitochondrion	26.07	32.3
CDY59993	Canola	cytosol, plastid	21.8	31.87
CDY41583	Canola	mitochondrion	18.05	31.17
CDX95970	Canola	mitochondrion	28.57	30.81
CDY33565	Canola	plastid	28.82	30.26
CDX95667	Canola	mitochondrion, plastid	28.07	29.4
CDX90231	Canola	mitochondrion	26.57	28.96
CDX83388	Canola	plastid	27.32	28.46
CDX83387	Canola	cytosol	25.81	28.45
CDY51469	Canola	mitochondrion	26.07	28.42
CDY47276	Canola	mitochondrion	25.81	27.99
CDY65427	Canola	cytosol	13.53	27.98
CDY57749	Canola	mitochondrion	24.56	27.84
CDX99887	Canola	extracellular, plasma membrane	24.56	27.61
CDY10120	Canola	mitochondrion	23.31	27.51
CDY10119	Canola	mitochondrion	25.31	27.45
CDY43323	Canola	mitochondrion	25.56	27.42
CDY15545	Canola	mitochondrion	22.81	27.33
CDX99797	Canola	plastid	25.56	27.27
CDX90173	Canola	mitochondrion	25.31	27.15
CDX98187	Canola	mitochondrion	24.56	26.85
CDY28820	Canola	cytosol	25.06	26.81
CDY50787	Canola	cytosol	21.55	26.54
CDX95668	Canola	mitochondrion	25.06	26.18
CDY57750	Canola	plastid	24.31	26.01
CDX86572	Canola	mitochondrion	11.53	25.99
CDX86573	Canola	mitochondrion	23.56	25.9
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	24.56	25.65
CDX90232	Canola	mitochondrion	22.56	25.28
CDY51468	Canola	mitochondrion	22.81	25.28
CDX99796	Canola	mitochondrion	24.81	24.94
CDX99886	Canola	cytosol	13.28	24.31
CDY15546	Canola	plastid	23.56	24.04
CDY47275	Canola	cytosol	23.06	23.96
CDX94769	Canola	cytosol	21.05	22.52
CDY48999	Canola	cytosol	21.55	22.16
CDY35144	Canola	mitochondrion	16.04	20.25
CDY53420	Canola	cytosol	16.54	19.64
CDY03244	Canola	cytosol	12.53	19.61
CDY10122	Canola	mitochondrion	26.57	14.62

Protein Annotations

EnsemblPlants:CDX92019	EnsemblPlantsGene:GSBRNA2T00153677001	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3	PFAM:PF03478
ProteinID:CDX92019	ProteinID:CDX92019.1	SEG:seg	UniParc:UPI0004EC53F9	MapMan:35.2	:

Description

BnaC03g33210D

Coordinates

chrLK031870:-:1285266..1286654

Molecular Weight (calculated)

45112.4 Da

IEP (calculated)

5.367

GRAVY (calculated)

-0.300

Length

399 amino acids

Sequence
(BLAST)

001: MFRFLQVGLA KPVRGLSSNS MQTVVRSLSS LEGVTSSPPY LLLPMEVVGD DGVDGKVVNL NYFDPMKKET VKVRNQIIPE KMCRKSSNYI GSSRGWVASM
101: NTEDMTVHVT NMFNPTVPKS SQRVISLPPF DPIPSDSHRP FNPCCPPSGY GASLSSCPDG SQDSDSSVTF ALKWDDSISF CNLGNGSKWT HLQHSLPLEF
201: QKSRVFFSDK DSTFYLTHNM PIVHVRHPSP QFHQLTYYPP LASSFCLPDI SNTEYELFRW CVPYNQMVQT PSGDLLVVIW FIQVKHDGNP IPYWEQYEKE
301: EDHVVNSTKR FMVLKVDSDN GCQSYTEDIG DLCIFYGQNE LFCVNATNYP GLKPNSIYFV EFGDTGRIYI FDLATQTFTE LAKLDNLTGP PYWLDPTLV

Best Arabidopsis Sequence Match ( AT1G68960.1 )
(BLAST)

001: MSQLLCRISK LSTSRNRILC FRRSEFSTVT AEATTPYLLL GSDLVGKSPC DGKVVNFNLY DPRKQEQVKI ENKILSKEVY ESHKLGSSRG WLALLNKKDS
101: TVRLTNILNP SKKIISLPSL TRDKYESHVN VSVSSSNEED CVVAVKFYGS RVSLCRPGDS EWTRIDVPCP SFHSSTVIYS ERDRRFYLNN CNPDYTGPTD
201: FTPKSGLHTP VSGYKRFLFS NFLEEMPELE NERRLSRFRI QQQLVESASG QSFIVAWFVE SLTDKGEVAT WGDTRYNNNK DLCKKTHKIM VIRQDEEQGI
301: GPYTDDIGDL CIFLGENESF CLSAKDFPGL NPNSVYFAGH GSGYGIWDLA SCTIRYLSDS TPPPGRMFWL PPTISQ

Arabidopsis Description

Uncharacterized protein T6L1.14 [Source:UniProtKB/TrEMBL;Acc:Q9CAA6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.