Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004352.1-P | Field mustard | mitochondrion | 86.84 | 88.71 |
| CDX95970 | Canola | mitochondrion | 85.26 | 87.57 |
| AT1G68960.1 | Thale cress | mitochondrion | 70.79 | 71.54 |
| CDY71779 | Canola | mitochondrion | 53.42 | 57.67 |
| CDY41583 | Canola | mitochondrion | 32.37 | 53.25 |
| CDY23447 | Canola | mitochondrion | 21.58 | 41.84 |
| CDX95813 | Canola | mitochondrion | 33.68 | 40.63 |
| CDY65207 | Canola | mitochondrion | 33.42 | 39.44 |
| CDY27327 | Canola | cytosol | 18.16 | 39.2 |
| CDX86571 | Canola | cytosol | 8.42 | 37.21 |
| CDX86572 | Canola | mitochondrion | 15.53 | 33.33 |
| CDY59993 | Canola | cytosol, plastid | 23.68 | 32.97 |
| CDY10120 | Canola | mitochondrion | 29.21 | 32.84 |
| CDY10119 | Canola | mitochondrion | 31.05 | 32.07 |
| CDY47276 | Canola | mitochondrion | 30.79 | 31.79 |
| CDX86573 | Canola | mitochondrion | 30.26 | 31.68 |
| CDY57750 | Canola | plastid | 30.53 | 31.1 |
| CDY15545 | Canola | mitochondrion | 26.84 | 30.63 |
| CDY43323 | Canola | mitochondrion | 29.74 | 30.38 |
| CDY28820 | Canola | cytosol | 29.74 | 30.29 |
| CDX90173 | Canola | mitochondrion | 29.47 | 30.11 |
| CDY57749 | Canola | mitochondrion | 27.37 | 29.55 |
| CDX92018 | Canola | mitochondrion | 30.26 | 29.41 |
| CDY28818 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 29.47 | 29.32 |
| CDY02744 | Canola | mitochondrion | 17.89 | 29.18 |
| CDY47275 | Canola | cytosol | 29.47 | 29.17 |
| CDX92019 | Canola | mitochondrion | 30.26 | 28.82 |
| CDX83387 | Canola | cytosol | 27.37 | 28.73 |
| CDX95667 | Canola | mitochondrion, plastid | 28.42 | 28.35 |
| CDX90231 | Canola | mitochondrion | 27.11 | 28.14 |
| CDY65427 | Canola | cytosol | 14.21 | 27.98 |
| CDX83388 | Canola | plastid | 28.16 | 27.94 |
| CDY51469 | Canola | mitochondrion | 26.84 | 27.87 |
| CDX99797 | Canola | plastid | 27.37 | 27.81 |
| CDX99886 | Canola | cytosol | 15.79 | 27.52 |
| CDY50787 | Canola | cytosol | 23.16 | 27.16 |
| CDX98187 | Canola | mitochondrion | 26.05 | 27.12 |
| CDX90232 | Canola | mitochondrion | 25.26 | 26.97 |
| CDX99796 | Canola | mitochondrion | 28.16 | 26.95 |
| CDY51468 | Canola | mitochondrion | 25.26 | 26.67 |
| CDX95668 | Canola | mitochondrion | 26.32 | 26.18 |
| CDY15546 | Canola | plastid | 26.32 | 25.58 |
| CDX99887 | Canola | extracellular, plasma membrane | 22.89 | 24.51 |
| CDY53420 | Canola | cytosol | 20.53 | 23.21 |
| CDY03244 | Canola | cytosol | 15.53 | 23.14 |
| CDX94769 | Canola | cytosol | 22.11 | 22.52 |
| CDY48999 | Canola | cytosol | 22.63 | 22.16 |
| CDY35144 | Canola | mitochondrion | 17.63 | 21.2 |
| CDY10122 | Canola | mitochondrion | 32.63 | 17.1 |
Protein Annotations
| EnsemblPlants:CDY33565 | EnsemblPlantsGene:GSBRNA2T00054856001 | InterPro:DUF295 | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF3 | PFAM:PF03478 |
| ProteinID:CDY33565 | ProteinID:CDY33565.1 | SEG:seg | UniParc:UPI0004EE937D | UniProt:A0A078H4R4 | MapMan:35.2 |
Description
BnaC06g29870DBnaC06g29870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4R4]
Coordinates
chrLK032317:-:172919..174501
Molecular Weight (calculated)
42277.7 Da
IEP (calculated)
6.606
GRAVY (calculated)
-0.439
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQLFSRVSK NPSSFPTRSL SSRRSNFSTV TPPYLLLGSD VVGESPCGGK LVDFNLYDPK TQKQVKIENQ TLSKELNESK WIGSSRGWLA SMNKNDSTVH
101: LSNIINPLKK TITLPPLTRD KFEHLVNVSV SSSDCCVVAV KFYGSRVSLC RLGDSEWTRV DVPCPSFHSS TVIYSERDER FYLNNCNPDY TGPTDFTPPS
201: NPGLLTPVCG YKRFPFTNFL EETGPALREM PEHENETCLS RFKIQQQLVQ SSSGQSFIVC WFVERFTDKG EAAPWGDTSY DNNKEGLCKK THKIMVFRQD
301: EEQGLGPHTD DIGDLCIFLG DNEAFCLSAK DYPGLNPNSV YFGGHGSGFG ICDLATRTIS YLSGSPPPSG RMFWIPPSSA
101: LSNIINPLKK TITLPPLTRD KFEHLVNVSV SSSDCCVVAV KFYGSRVSLC RLGDSEWTRV DVPCPSFHSS TVIYSERDER FYLNNCNPDY TGPTDFTPPS
201: NPGLLTPVCG YKRFPFTNFL EETGPALREM PEHENETCLS RFKIQQQLVQ SSSGQSFIVC WFVERFTDKG EAAPWGDTSY DNNKEGLCKK THKIMVFRQD
301: EEQGLGPHTD DIGDLCIFLG DNEAFCLSAK DYPGLNPNSV YFGGHGSGFG ICDLATRTIS YLSGSPPPSG RMFWIPPSSA
001: MSQLLCRISK LSTSRNRILC FRRSEFSTVT AEATTPYLLL GSDLVGKSPC DGKVVNFNLY DPRKQEQVKI ENKILSKEVY ESHKLGSSRG WLALLNKKDS
101: TVRLTNILNP SKKIISLPSL TRDKYESHVN VSVSSSNEED CVVAVKFYGS RVSLCRPGDS EWTRIDVPCP SFHSSTVIYS ERDRRFYLNN CNPDYTGPTD
201: FTPKSGLHTP VSGYKRFLFS NFLEEMPELE NERRLSRFRI QQQLVESASG QSFIVAWFVE SLTDKGEVAT WGDTRYNNNK DLCKKTHKIM VIRQDEEQGI
301: GPYTDDIGDL CIFLGENESF CLSAKDFPGL NPNSVYFAGH GSGYGIWDLA SCTIRYLSDS TPPPGRMFWL PPTISQ
101: TVRLTNILNP SKKIISLPSL TRDKYESHVN VSVSSSNEED CVVAVKFYGS RVSLCRPGDS EWTRIDVPCP SFHSSTVIYS ERDRRFYLNN CNPDYTGPTD
201: FTPKSGLHTP VSGYKRFLFS NFLEEMPELE NERRLSRFRI QQQLVESASG QSFIVAWFVE SLTDKGEVAT WGDTRYNNNK DLCKKTHKIM VIRQDEEQGI
301: GPYTDDIGDL CIFLGENESF CLSAKDFPGL NPNSVYFAGH GSGYGIWDLA SCTIRYLSDS TPPPGRMFWL PPTISQ
Arabidopsis Description
Uncharacterized protein T6L1.14 [Source:UniProtKB/TrEMBL;Acc:Q9CAA6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.