Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032294.1-P | Field mustard | cytosol | 97.22 | 97.22 |
| CDX99797 | Canola | plastid | 92.9 | 80.48 |
| CDX86571 | Canola | cytosol | 15.12 | 56.98 |
| CDX99886 | Canola | cytosol | 36.42 | 54.13 |
| CDY10119 | Canola | mitochondrion | 54.94 | 48.37 |
| CDY47276 | Canola | mitochondrion | 53.09 | 46.74 |
| CDX90232 | Canola | mitochondrion | 51.23 | 46.63 |
| CDY10120 | Canola | mitochondrion | 47.53 | 45.56 |
| CDY51468 | Canola | mitochondrion | 50.31 | 45.28 |
| CDY65427 | Canola | cytosol | 26.23 | 44.04 |
| CDY57749 | Canola | mitochondrion | 47.84 | 44.03 |
| CDY15545 | Canola | mitochondrion | 44.14 | 42.94 |
| CDX98187 | Canola | mitochondrion | 47.84 | 42.47 |
| CDX90231 | Canola | mitochondrion | 47.84 | 42.35 |
| CDX99796 | Canola | mitochondrion | 51.85 | 42.32 |
| CDY57750 | Canola | plastid | 48.46 | 42.09 |
| CDY51469 | Canola | mitochondrion | 47.53 | 42.08 |
| CDY15546 | Canola | plastid | 50.62 | 41.94 |
| CDX86573 | Canola | mitochondrion | 46.91 | 41.87 |
| CDX86572 | Canola | mitochondrion | 22.84 | 41.81 |
| CDY47275 | Canola | cytosol | 49.07 | 41.41 |
| CDX90173 | Canola | mitochondrion | 46.91 | 40.86 |
| CDY43323 | Canola | mitochondrion | 46.91 | 40.86 |
| CDX99887 | Canola | extracellular, plasma membrane | 42.9 | 39.15 |
| CDX83388 | Canola | plastid | 42.28 | 35.77 |
| CDY59993 | Canola | cytosol, plastid | 29.63 | 35.16 |
| CDX83387 | Canola | cytosol | 38.58 | 34.53 |
| CDX95667 | Canola | mitochondrion, plastid | 40.43 | 34.38 |
| CDX95668 | Canola | mitochondrion | 39.51 | 33.51 |
| CDY27327 | Canola | cytosol | 16.67 | 30.68 |
| CDX94769 | Canola | cytosol | 33.02 | 28.69 |
| CDX95813 | Canola | mitochondrion | 27.16 | 27.94 |
| CDY48999 | Canola | cytosol | 33.33 | 27.84 |
| CDY65207 | Canola | mitochondrion | 27.47 | 27.64 |
| CDY53420 | Canola | cytosol | 28.09 | 27.08 |
| CDY03244 | Canola | cytosol | 20.99 | 26.67 |
| CDY23447 | Canola | mitochondrion | 15.74 | 26.02 |
| CDY28820 | Canola | cytosol | 29.94 | 26.01 |
| CDY10122 | Canola | mitochondrion | 58.02 | 25.93 |
| CDY02744 | Canola | mitochondrion | 18.21 | 25.32 |
| CDY71779 | Canola | mitochondrion | 26.85 | 24.72 |
| CDY28818 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 29.01 | 24.61 |
| CDX92018 | Canola | mitochondrion | 28.4 | 23.53 |
| CDX95970 | Canola | mitochondrion | 26.54 | 23.24 |
| CDY33565 | Canola | plastid | 27.16 | 23.16 |
| CDX92019 | Canola | mitochondrion | 26.54 | 21.55 |
| CDY35144 | Canola | mitochondrion | 19.44 | 19.94 |
| CDY41583 | Canola | mitochondrion | 13.89 | 19.48 |
Protein Annotations
| EnsemblPlants:CDY50787 | EnsemblPlantsGene:GSBRNA2T00097487001 | InterPro:DUF295 | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF3 | PFAM:PF03478 |
| ProteinID:CDY50787 | ProteinID:CDY50787.1 | UniParc:UPI0004EEA9AA | UniProt:A0A078ILH2 | MapMan:35.2 | : |
Description
BnaA09g54160DBnaA09g54160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILH2]
Coordinates
chrLK032939:+:67070..68135
Molecular Weight (calculated)
36786.1 Da
IEP (calculated)
6.576
GRAVY (calculated)
-0.132
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGDVHLFDA ATEGLVTVAD KTIPVELVNG GIVVGASHGW LFFKDRHDHS VSMTDFYNSL ALKKNATMVP MPTFTALHHC QTEVVWNVAM STSPGQQEDE
101: DDWVVGIKFL GNQLSFCRPR RDLRWTNVSA PFKIFNNSNL MFSKRDKTFK LPAPVGNYLC SWDIQFHKDE YPAPKLHKLL FHNLPQLPLS MWELLDSCPR
201: EDHWVESPSG ESFLVKWYSR VSLSPSLSTL PIVMVFREED RKDGIIKMCY TEDIGDICVF LSKSEAFCVP ASSCPGLKPN SIYVADRVFS VYDLTTKTFN
301: HFKYPIDAPE KISRVPCWLP PVSV
101: DDWVVGIKFL GNQLSFCRPR RDLRWTNVSA PFKIFNNSNL MFSKRDKTFK LPAPVGNYLC SWDIQFHKDE YPAPKLHKLL FHNLPQLPLS MWELLDSCPR
201: EDHWVESPSG ESFLVKWYSR VSLSPSLSTL PIVMVFREED RKDGIIKMCY TEDIGDICVF LSKSEAFCVP ASSCPGLKPN SIYVADRVFS VYDLTTKTFN
301: HFKYPIDAPE KISRVPCWLP PVSV
001: MSRLLSKLSP LIHKSSRNIR SFSSSTTGPC VSICTVVEPS PDGNLGQVLL FNIPDMKLVT ADKIYPDELY DAQLVGASHG WGLFSDRTNR SALISDYLNP
101: YASKSKPKMI HLPFFTPMYS GQTEVVCNVA MSSPPPDQDD DHEDWVVGIK FLGRQLSLCR PRHDLRWTNI LTPFESWEVS ELMYSKKDQR FYLLAPGGNY
201: LCSWDLNFKE DKKPKFHELV LHNLPNMPRS LWKQLDSYGR EDHWVESPSG ESFLVKWFCE YSPENTSNWC KSPIVMVFRE EETKDGRKNM RYTDDIGDLC
301: IFISKGEDFC VKASSCPGLQ PNSISLHGRL FAILNLTKRT MGCYEYPQGI PKRIPYLPYW LPPFSP
101: YASKSKPKMI HLPFFTPMYS GQTEVVCNVA MSSPPPDQDD DHEDWVVGIK FLGRQLSLCR PRHDLRWTNI LTPFESWEVS ELMYSKKDQR FYLLAPGGNY
201: LCSWDLNFKE DKKPKFHELV LHNLPNMPRS LWKQLDSYGR EDHWVESPSG ESFLVKWFCE YSPENTSNWC KSPIVMVFRE EETKDGRKNM RYTDDIGDLC
301: IFISKGEDFC VKASSCPGLQ PNSISLHGRL FAILNLTKRT MGCYEYPQGI PKRIPYLPYW LPPFSP
Arabidopsis Description
At1g30160 [Source:UniProtKB/TrEMBL;Acc:Q6DBP6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.