CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10119	Canola	mitochondrion	38.34	75.54
CDY47276	Canola	mitochondrion	38.07	75.0
CDX86571	Canola	cytosol	8.83	74.42
AT1G05540.1	Thale cress	mitochondrion	35.72	70.57
CDY10120	Canola	mitochondrion	32.0	68.64
CDY47275	Canola	cytosol	32.69	61.72
CDX86573	Canola	mitochondrion	29.1	58.13
CDY50787	Canola	cytosol	25.93	58.02
CDX86572	Canola	mitochondrion	14.07	57.63
CDX99797	Canola	plastid	29.1	56.42
CDY15545	Canola	mitochondrion	25.52	55.56
CDX99886	Canola	cytosol	16.28	54.13
CDY15546	Canola	plastid	28.55	52.94
CDY57749	Canola	mitochondrion	25.1	51.7
CDY57750	Canola	plastid	26.48	51.47
CDX90231	Canola	mitochondrion	25.24	50.0
CDY51469	Canola	mitochondrion	25.1	49.73
CDX90232	Canola	mitochondrion	24.28	49.44
CDX98187	Canola	mitochondrion	24.83	49.32
CDY43323	Canola	mitochondrion	25.24	49.19
CDX99796	Canola	mitochondrion	26.76	48.87
CDX90173	Canola	mitochondrion	24.97	48.66
CDY51468	Canola	mitochondrion	23.86	48.06
CDX99887	Canola	extracellular, plasma membrane	21.93	44.79
CDX83388	Canola	plastid	23.59	44.65
CDX95667	Canola	mitochondrion, plastid	23.45	44.62
CDY59993	Canola	cytosol, plastid	16.14	42.86
CDY65427	Canola	cytosol	11.17	41.97
CDX83387	Canola	cytosol	20.0	40.06
CDX95668	Canola	mitochondrion	20.28	38.48
CDY02744	Canola	mitochondrion	11.59	36.05
CDX95813	Canola	mitochondrion	15.31	35.24
CDY41583	Canola	mitochondrion	10.9	34.2
CDY23447	Canola	mitochondrion	9.24	34.18
CDY71779	Canola	mitochondrion	16.55	34.09
CDY65207	Canola	mitochondrion	15.03	33.85
CDX94769	Canola	cytosol	17.1	33.24
CDX95970	Canola	mitochondrion	16.69	32.7
CDY33565	Canola	plastid	17.1	32.63
CDY28820	Canola	cytosol	16.69	32.44
CDY48999	Canola	cytosol	17.24	32.22
CDY27327	Canola	cytosol	7.72	31.82
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	16.69	31.68
CDY53420	Canola	cytosol	14.48	31.25
CDY03244	Canola	cytosol	10.34	29.41
CDX92018	Canola	mitochondrion	15.59	28.9
CDX92019	Canola	mitochondrion	14.62	26.57
CDY35144	Canola	mitochondrion	11.31	25.95

Protein Annotations

EnsemblPlants:CDY10122	EnsemblPlantsGene:GSBRNA2T00031928001	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3	PFAM:PF03478
ProteinID:CDY10122	ProteinID:CDY10122.1	SEG:seg	UniParc:UPI0004EDF024	UniProt:A0A078FAS5	MapMan:35.2

Description

BnaC05g03650DBnaC05g03650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAS5]

Coordinates

chrLK032001:+:127087..130828

Molecular Weight (calculated)

81880.9 Da

IEP (calculated)

6.368

GRAVY (calculated)

-0.253

Length

725 amino acids

Sequence
(BLAST)

001: MSQLLSRLSK LSSRNKTVLK HKNSRLLSTS PYLIVGVFAE DARARGGGFL GDILLFDPAK EELLTVRDKT VSEELICSKV MGASHGWGFF SDLRNHNSVR
101: ITDFFNPLAS KSDSKIIPLP PLTSMIYGQT EVVWNVAMSS SSPYRQDNEE GDCVVAIKFL GNQLSMCRPG RDLAWTNKLI PFVGFENSNL MYSKRDQRFS
201: LPAPGGNYLC SWDLHFENEP KFTELVFRNL PELPQSEWEL MDSCFREDHW VESPSGQSFL VKWYSHVPPI RCKEPMVMVF REDQDTNEGT KTMSYTEDIG
301: DLCIFLSKSK PFCVVASSFP GLKPNSIYLM GRCFAVYDIT TKTSRHFERP KGVLNIQCLS FSSVSPNSRP GRTMFLYTHK SSRLFSTSPY LTLGTRVKEV
401: LPGGCKIADV LLFDPVEEEL VTVPDKTIPK ELMDQEMVGA SHGWGFFCAR HDRSVRITDL FNPLASKSNP TVITLPQLTA LPSNQIEEVC NVAMTSSPHL
501: EDCVVAIKFS GNQMSLCRPG RDLEWTNILT PPNCLENSNL MYSKRDKKFY LPAPGGKYLF SYHLHSKEED IPEVQEVVYR GHPELDQSEW ELLSSCTRTE
601: YLVESSFSGE RFLIKWYALG FYSSVLKGVY HITKRFMVFR EEETTEGSIM CYTEDIGDMC IFLANSEAFC VPASSCAGLK PNSIYHMGRG LGFYDLTTGN
701: PHQYLAPDGA PSVLSQPYWL PPFST

Best Arabidopsis Sequence Match ( AT1G05540.1 )
(BLAST)

001: MSQLLFRLSK LSSRNNELIH KSVRLFSTSP YLTLGSVVED LPEEDGSYIG DILLFDPAKE ELVTVRDKTI PEKLVNSRVV GASHGWTFFS DRCNHNSVCI
101: SDLFTPMASK SNTKIIPLPL LTTMIYGQTE AVWNVAMSSS SPHQDNEEED CVVAINFLGS QLSVCRPGRD HGWTNKQIPF ICSENSNLMY SKRDQRFYLP
201: APGGNYLCSW DLHFDNDPKF NELVFLNLPE LPQSEWELLN SCFKEDHWVE SPSGQSFLVK WYSHIPSQRY KDPILMVLRE DEETEEGTRN MCYTEDIGDL
301: CIFLSKSDPF CVVASSCPGL KPNSIYLMGR CFAVYDLTTR TARHFKAPKG GPERVPFLPY WLPPFSI

Arabidopsis Description

T25N20.19 [Source:UniProtKB/TrEMBL;Acc:Q9ZVY4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.