Factsheet for AT1G05540.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10119	Canola	mitochondrion	73.3	73.1
Bra015433.1-P	Field mustard	mitochondrion	73.02	72.83
CDY47276	Canola	mitochondrion	72.75	72.55
Bra030615.1-P	Field mustard	mitochondrion	67.3	68.23
CDY15546	Canola	plastid	61.31	57.54
AT1G30160.2	Thale cress	mitochondrion	53.68	53.83
AT1G30170.1	Thale cress	mitochondrion	49.59	49.73
AT1G05550.3	Thale cress	cytosol	52.04	49.61
AT2G45940.2	Thale cress	cytosol	43.87	44.11
AT4G16080.1	Thale cress	mitochondrion	41.42	42.94
AT5G67040.1	Thale cress	mitochondrion	18.8	41.82
AT4G16090.1	Thale cress	mitochondrion	28.07	38.43
AT5G55440.1	Thale cress	mitochondrion	37.06	37.26
AT5G46140.1	Thale cress	cytosol	28.61	36.33
CDY10122	Canola	mitochondrion	70.57	35.72
AT4G25920.1	Thale cress	mitochondrion, plastid	37.6	35.38
AT2G45930.1	Thale cress	mitochondrion	22.62	34.73
AT5G53780.1	Thale cress	cytosol	33.79	32.98
AT1G68960.1	Thale cress	mitochondrion	33.79	32.98
AT4G14260.1	Thale cress	nucleus	33.79	32.72
AT5G46130.1	Thale cress	mitochondrion	33.24	32.45
AT4G25930.1	Thale cress	mitochondrion	32.43	32.43
AT5G03390.1	Thale cress	mitochondrion	31.88	31.37
AT5G53790.1	Thale cress	cytosol	32.43	31.32

Protein Annotations

MapMan:35.2	EntrezGene:837056	UniProt:A0A178WJ68	ProteinID:AAF79728.1	ProteinID:AEE27850.1	ArrayExpress:AT1G05540
EnsemblPlantsGene:AT1G05540	RefSeq:AT1G05540	TAIR:AT1G05540	RefSeq:AT1G05540-TAIR-G	EnsemblPlants:AT1G05540.1	TAIR:AT1G05540.1
Unigene:At.42393	InterPro:DUF295	RefSeq:NP_172045.1	ProteinID:OAP18419.1	PFAM:PF03478	PO:PO:0000013
PO:PO:0000037	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3
UniProt:Q9ZVY4	UniParc:UPI00000AA7E9	:	:	:	:

Description

T25N20.19 [Source:UniProtKB/TrEMBL;Acc:Q9ZVY4]

Coordinates

chr1:+:1639223..1640879

Molecular Weight (calculated)

41796.7 Da

IEP (calculated)

5.125

GRAVY (calculated)

-0.296

Length

367 amino acids

Sequence
(BLAST)

001: MSQLLFRLSK LSSRNNELIH KSVRLFSTSP YLTLGSVVED LPEEDGSYIG DILLFDPAKE ELVTVRDKTI PEKLVNSRVV GASHGWTFFS DRCNHNSVCI
101: SDLFTPMASK SNTKIIPLPL LTTMIYGQTE AVWNVAMSSS SPHQDNEEED CVVAINFLGS QLSVCRPGRD HGWTNKQIPF ICSENSNLMY SKRDQRFYLP
201: APGGNYLCSW DLHFDNDPKF NELVFLNLPE LPQSEWELLN SCFKEDHWVE SPSGQSFLVK WYSHIPSQRY KDPILMVLRE DEETEEGTRN MCYTEDIGDL
301: CIFLSKSDPF CVVASSCPGL KPNSIYLMGR CFAVYDLTTR TARHFKAPKG GPERVPFLPY WLPPFSI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.