Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28818 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 57.45 | 56.54 |
| Bra022671.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 57.45 | 56.54 |
| AT5G67040.1 | Thale cress | mitochondrion | 19.95 | 45.45 |
| AT5G55440.1 | Thale cress | mitochondrion | 33.78 | 34.79 |
| AT5G53790.1 | Thale cress | cytosol | 35.11 | 34.74 |
| AT1G05540.1 | Thale cress | mitochondrion | 32.98 | 33.79 |
| AT1G30170.1 | Thale cress | mitochondrion | 30.05 | 30.87 |
| AT2G45940.2 | Thale cress | cytosol | 29.26 | 30.14 |
| AT1G68960.1 | Thale cress | mitochondrion | 29.79 | 29.79 |
| AT4G16080.1 | Thale cress | mitochondrion | 27.39 | 29.1 |
| AT1G05550.3 | Thale cress | cytosol | 29.52 | 28.83 |
| AT1G30160.2 | Thale cress | mitochondrion | 27.93 | 28.69 |
| AT5G46140.1 | Thale cress | cytosol | 21.54 | 28.03 |
| AT5G03390.1 | Thale cress | mitochondrion | 26.86 | 27.08 |
| AT4G16090.1 | Thale cress | mitochondrion | 19.15 | 26.87 |
| AT4G25930.1 | Thale cress | mitochondrion | 26.06 | 26.7 |
| AT5G46130.1 | Thale cress | mitochondrion | 26.33 | 26.33 |
| AT4G14260.1 | Thale cress | nucleus | 25.53 | 25.33 |
| AT4G25920.1 | Thale cress | mitochondrion, plastid | 26.06 | 25.13 |
| AT2G45930.1 | Thale cress | mitochondrion | 15.16 | 23.85 |
Protein Annotations
| ArrayExpress:AT5G53780 | EnsemblPlants:AT5G53780.1 | EnsemblPlantsGene:AT5G53780 | EntrezGene:835459 | InterPro:DUF295 | PANTHER:PTHR31681 |
| PANTHER:PTHR31681:SF3 | PFAM:PF03478 | ProteinID:AED96406.1 | ProteinID:BAB09550.1 | RefSeq:AT5G53780 | RefSeq:AT5G53780-TAIR-G |
| RefSeq:NP_200189.1 | SEG:seg | TAIR:AT5G53780 | TAIR:AT5G53780.1 | Unigene:At.55533 | UniParc:UPI00000A6CE1 |
| UniProt:Q9FHZ8 | MapMan:35.2 | : | : | : | : |
Description
F-box protein, putative (DUF295) [Source:UniProtKB/TrEMBL;Acc:Q9FHZ8]
Coordinates
chr5:-:21839818..21841977
Molecular Weight (calculated)
43155.8 Da
IEP (calculated)
5.752
GRAVY (calculated)
-0.206
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSILVQRKN EDKFGFKSNS FHEQSQVEEE ESDHKAARFF SSSPKQTPYM VLVGDKVGES PEAENIIMSF KLFDLSKEEI IEVIHKSFPK LLYQDSRVIG
101: SSRGWIAFMS KHDGTVHLSD VFNLGSLRVI TLPPLPDPMY DPSRVIINVS LSYPPDQEDD YVVYIKFLCS DIYLCRPNHH SQWVGCDGNE IHTTASDIVY
201: SPRNQMLFLV IMGASFLCSF DLNMNKKYTR LHLRNIPMMP QSEWELLAMC IKIEHLVESP GGRIFVVKQY VETYDQGDKE VIFNKTKRFM VFKLNTKATD
301: GEIAAYYTED IGDLCIFFGN NETLCLEASN NPGLKPNYIY YIGYGLGFYD MSSQKVHHFT SSMPLNWPLY LLPGLI
101: SSRGWIAFMS KHDGTVHLSD VFNLGSLRVI TLPPLPDPMY DPSRVIINVS LSYPPDQEDD YVVYIKFLCS DIYLCRPNHH SQWVGCDGNE IHTTASDIVY
201: SPRNQMLFLV IMGASFLCSF DLNMNKKYTR LHLRNIPMMP QSEWELLAMC IKIEHLVESP GGRIFVVKQY VETYDQGDKE VIFNKTKRFM VFKLNTKATD
301: GEIAAYYTED IGDLCIFFGN NETLCLEASN NPGLKPNYIY YIGYGLGFYD MSSQKVHHFT SSMPLNWPLY LLPGLI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.