Factsheet for Bra022671.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
golgi 2
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid, secretory
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	100.0	100.0
AT5G53780.1	Thale cress	cytosol	56.54	57.45
Bra022669.1-P	Field mustard	cytosol	39.27	40.21
Bra020431.1-P	Field mustard	mitochondrion	32.98	34.9
Bra015433.1-P	Field mustard	mitochondrion	32.72	33.97
Bra015434.1-P	Field mustard	cytosol	29.58	33.04
Bra040901.1-P	Field mustard	mitochondrion	31.15	32.87
Bra010792.1-P	Field mustard	cytosol	14.66	31.64
Bra030614.1-P	Field mustard	mitochondrion	28.27	30.59
Bra010846.1-P	Field mustard	mitochondrion	29.32	30.11
Bra004352.1-P	Field mustard	mitochondrion	29.06	29.84
Bra032294.1-P	Field mustard	cytosol	24.87	29.32
Bra030615.1-P	Field mustard	mitochondrion	27.49	29.01
Bra010793.1-P	Field mustard	mitochondrion	27.49	28.69
Bra000406.1-P	Field mustard	cytosol	26.44	27.9
Bra010791.1-P	Field mustard	mitochondrion	25.92	27.81
Bra000405.1-P	Field mustard	plastid	28.01	27.79
Bra039286.1-P	Field mustard	mitochondrion	24.08	26.51
Bra033734.1-P	Field mustard	cytosol	23.04	22.68
Bra017579.1-P	Field mustard	cytosol	14.92	19.93

Protein Annotations

EnsemblPlants:Bra022671.1	EnsemblPlants:Bra022671.1-P	EnsemblPlantsGene:Bra022671	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3
PFAM:PF03478	SEG:seg	UniParc:UPI0002546A40	UniProt:M4E1M1	MapMan:35.2	:

Description

AT5G53780 (E=7e-125) | unknown protein

Coordinates

chrA02:-:8135234..8136527

Molecular Weight (calculated)

43722.8 Da

IEP (calculated)

6.111

GRAVY (calculated)

-0.068

Length

382 amino acids

Sequence
(BLAST)

001: MSWNLEEFGV ASWTTMSLLF NQFVELFVDE EGEEDHKARF VFASSPQKQT PYMILEGDKV GESSSEAEKI VMNFKLLDLR KEEIIEVTHK TFPKLLYEGS
101: RVIGSSRGWT AFMSKHDGTV YLSNVFNLAF SRVIALPSLS DPLRLRSTAI VNVSISSPPD QDDGYVVFVK FLGSNLYYCR PDRVSQWTQM DIEGSHVNLC
201: DVIYSPRNQM LFLVIIGASY LLSFDVNMER RYTILNLRNL PKMPQSEWEM LALCCKSEHM VEAPCGKCFI VRRYVETYDN NGIIFKKTKR FMVFLLDKKV
301: KDGEITARYT KDIGDLCIFF GTNETFCVEA SKYHGLNPNS IYYIGYGLGV YDIGSGIFYH FPSYMPLNSP LCLLPILSNP HV

Best Arabidopsis Sequence Match ( AT5G53780.1 )
(BLAST)

001: MLSILVQRKN EDKFGFKSNS FHEQSQVEEE ESDHKAARFF SSSPKQTPYM VLVGDKVGES PEAENIIMSF KLFDLSKEEI IEVIHKSFPK LLYQDSRVIG
101: SSRGWIAFMS KHDGTVHLSD VFNLGSLRVI TLPPLPDPMY DPSRVIINVS LSYPPDQEDD YVVYIKFLCS DIYLCRPNHH SQWVGCDGNE IHTTASDIVY
201: SPRNQMLFLV IMGASFLCSF DLNMNKKYTR LHLRNIPMMP QSEWELLAMC IKIEHLVESP GGRIFVVKQY VETYDQGDKE VIFNKTKRFM VFKLNTKATD
301: GEIAAYYTED IGDLCIFFGN NETLCLEASN NPGLKPNYIY YIGYGLGFYD MSSQKVHHFT SSMPLNWPLY LLPGLI

Arabidopsis Description

F-box protein, putative (DUF295) [Source:UniProtKB/TrEMBL;Acc:Q9FHZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.