Factsheet for Bra000405.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83388	Canola	plastid	96.62	97.13
AT2G45940.2	Thale cress	cytosol	62.34	65.75
AT4G16080.1	Thale cress	mitochondrion	58.7	63.84
Bra000406.1-P	Field mustard	cytosol	43.9	46.69
Bra010792.1-P	Field mustard	cytosol	20.0	43.5
Bra010793.1-P	Field mustard	mitochondrion	41.3	43.44
Bra015433.1-P	Field mustard	mitochondrion	41.3	43.21
Bra030615.1-P	Field mustard	mitochondrion	40.26	42.82
Bra015434.1-P	Field mustard	cytosol	37.92	42.69
Bra032294.1-P	Field mustard	cytosol	35.32	41.98
Bra010846.1-P	Field mustard	mitochondrion	39.48	40.86
Bra010791.1-P	Field mustard	mitochondrion	37.14	40.17
Bra030614.1-P	Field mustard	mitochondrion	35.84	39.09
Bra020431.1-P	Field mustard	mitochondrion	34.81	37.12
Bra040901.1-P	Field mustard	mitochondrion	30.91	32.87
Bra039286.1-P	Field mustard	mitochondrion	27.79	30.84
Bra022669.1-P	Field mustard	cytosol	29.09	30.03
Bra033734.1-P	Field mustard	cytosol	30.13	29.9
Bra004352.1-P	Field mustard	mitochondrion	27.53	28.49
Bra022671.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	27.79	28.01
Bra017579.1-P	Field mustard	cytosol	17.92	24.13

Protein Annotations

EnsemblPlants:Bra000405.1	EnsemblPlants:Bra000405.1-P	EnsemblPlantsGene:Bra000405	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3
PFAM:PF03478	SEG:seg	UniParc:UPI000253FEA4	UniProt:M4C877	MapMan:35.2	:

Description

AT2G45940 (E=2e-131) | unknown protein

Coordinates

chrA03:-:10954955..10956281

Molecular Weight (calculated)

43569.1 Da

IEP (calculated)

7.043

GRAVY (calculated)

-0.233

Length

385 amino acids

Sequence
(BLAST)

001: MSWSSSLLLS LSSKLSPRKL ALRCQTLRTF SSTTTTTTTN PNLFYRVSCC GEKGDVESPG VMTQLHMFDP AKEEHIIVGD MPFPKELVES SLVGSSHGWG
101: VFLWGHRSLL ITDFCNPLSF KSKPKFIPLL LRPDLIGCQA ELVSGVAMSS SPDEEEEDYL VAVKFTGRVV SIYKPSDTKA ALHYILPHNV FDHFEPSKLM
201: YSKRDQRFYM VSSGGHHLWS WDGLESTRPE FHELRFHNLP QFSCSELQLL DSSHRTHHLV ESPSGQRFLV KWYVQSSKAL GFNCGGTKRF MVFREEEDMN
301: MCYTEDIGDL CIFLGDNEPF CVKASLFPGL NPNSIYFIGE AYGEGYGVYS IATRTPRSFK PKPTSSGQGF MIRLWAPHWL PPFPL

Best Arabidopsis Sequence Match ( AT2G45940.2 )
(BLAST)

001: MFSSSSTTTN PYLMYYVTYS DEAPQAGAMT ELRMFDPAKE EYFTVHDKPL PKELVKSRLV GSSHGWGVFL GSPNSILISD YCNPSSSKSN PKMIPLPPRS
101: YEHSCQNELV SGVAMSSSPE EEDFVMAVKF TGRRVSIYRP GQHRKGNHRF SSTELFDYFE QANLMYSKRD QRFYMPSSGG HHLWSWDGII STDSQYHDLR
201: FHNLPQFSLS ELQLLRSCYR TQHLVESPSG QRFLVKWSVQ TLGRSVQSLA HRSVEFSFGG TKLFMVFREE EDMNMCYTQD IGDLCIFLGN NEPFCVKASS
301: FPGLNPNSIY FIGDRYGEGY GVYDIATRTP RSFNPKSFSA FSDLPNGQGY VLPNWLPHWI PPFPL

Arabidopsis Description

Protein of unknown function (DUF295) [Source:TAIR;Acc:AT2G45940]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.