Factsheet for Bra000406.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83387	Canola	cytosol	96.69	96.69
AT4G16090.1	Thale cress	mitochondrion	46.41	62.69
AT2G45930.1	Thale cress	mitochondrion	32.04	48.54
Bra015434.1-P	Field mustard	cytosol	42.27	44.74
Bra000405.1-P	Field mustard	plastid	46.69	43.9
Bra032294.1-P	Field mustard	cytosol	34.81	38.89
Bra010793.1-P	Field mustard	mitochondrion	39.23	38.8
Bra010792.1-P	Field mustard	cytosol	18.51	37.85
Bra015433.1-P	Field mustard	mitochondrion	38.4	37.77
Bra030614.1-P	Field mustard	mitochondrion	36.19	37.11
Bra010846.1-P	Field mustard	mitochondrion	37.29	36.29
Bra030615.1-P	Field mustard	mitochondrion	34.53	34.53
Bra010791.1-P	Field mustard	mitochondrion	32.32	32.87
Bra020431.1-P	Field mustard	mitochondrion	31.49	31.58
Bra040901.1-P	Field mustard	mitochondrion	30.94	30.94
Bra033734.1-P	Field mustard	cytosol	32.6	30.41
Bra039286.1-P	Field mustard	mitochondrion	28.73	29.97
Bra004352.1-P	Field mustard	mitochondrion	29.01	28.23
Bra022669.1-P	Field mustard	cytosol	27.9	27.08
Bra022671.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	27.9	26.44
Bra017579.1-P	Field mustard	cytosol	17.96	22.73

Protein Annotations

EnsemblPlants:Bra000406.1	EnsemblPlants:Bra000406.1-P	EnsemblPlantsGene:Bra000406	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3
PFAM:PF03478	SEG:seg	UniParc:UPI000253FEA5	UniProt:M4C878	MapMan:35.2	:

Description

AT4G16090 (E=4e-094) | unknown protein

Coordinates

chrA03:-:10957548..10958636

Molecular Weight (calculated)

41217.9 Da

IEP (calculated)

7.540

GRAVY (calculated)

-0.444

Length

362 amino acids

Sequence
(BLAST)

001: MFSSSSSTTT NPYLMYGTTI YGNPEEDLHV RSDIHYFDPV KENEVIVRDK TLPMEFRKEC VLGGMSHGWV VFKARSDDKK DKVLYISDYY TPCGSKSNPK
101: TIPLHPMGQQ PGRPAQYLNI TNVAMTCSPD QSNDFAVAVN CLGPVINFFR PGGKHKYSGS VHFTTPLQHF NQSKVMYSKR DEKFYTTSVN GQFLVYYDAF
201: FEEDMTGSEV HELRFINHPE LAQSEWEILD SCSKTVHLVE SPSGQRFLIK WYAQNHQPGK KITFLCRGTK RFMVFREEEE TRVMSYTEDI GDLCIFLGNS
301: EPFCVKASSF PGLNPNSIYF AGDGFGVYDI ATRKPRSFRP KSPAAFSRAS PAFQWIPPIM SL

Best Arabidopsis Sequence Match ( AT4G16090.1 )
(BLAST)

001: MSSLLLSLSS KASLRKLPLR CHTLRMFSSS TTNPYLLYRV INYGSSMDDI HVTSNIHYFD PVKEDEVIVR DKVLPMELRK GCLVGMSHGW GVFKAVCDYN
101: EYKAIYVTDY YNPCGSKSVK SIPLHPLGKP IAIQQQAITN AAMTCSPDQS KDFAVAVKCL GPMINFNRPG GTHKDSGSVI FKTPFQYFDQ SKVMYSKRDE
201: KFYTPSFGGH FLVFWDSFFG EDMTGSELVE LRFCNVPKLT QSEWELLDSC SKTVYLVESP SGQRFLIK

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45930.1); Has 76 Blast hits to 76 proteins in 2 spec /.../rchae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). [Source:TAIR;Acc:AT4G16090]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.