Factsheet for Bra022669.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
cytosol 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	extracellular, golgi, plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28820	Canola	cytosol	100.0	100.0
AT5G53790.1	Thale cress	cytosol	56.84	55.79
Bra022671.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	40.21	39.27
Bra020431.1-P	Field mustard	mitochondrion	34.58	35.73
Bra010792.1-P	Field mustard	cytosol	16.62	35.03
Bra040901.1-P	Field mustard	mitochondrion	32.44	33.43
Bra010793.1-P	Field mustard	mitochondrion	32.71	33.33
Bra015433.1-P	Field mustard	mitochondrion	32.71	33.15
Bra015434.1-P	Field mustard	cytosol	30.29	33.04
Bra030614.1-P	Field mustard	mitochondrion	30.83	32.58
Bra030615.1-P	Field mustard	mitochondrion	29.76	30.66
Bra039286.1-P	Field mustard	mitochondrion	28.42	30.55
Bra004352.1-P	Field mustard	mitochondrion	30.29	30.38
Bra010791.1-P	Field mustard	mitochondrion	28.95	30.34
Bra032294.1-P	Field mustard	cytosol	26.01	29.94
Bra000405.1-P	Field mustard	plastid	30.03	29.09
Bra010846.1-P	Field mustard	mitochondrion	28.15	28.23
Bra000406.1-P	Field mustard	cytosol	27.08	27.9
Bra033734.1-P	Field mustard	cytosol	27.35	26.29
Bra017579.1-P	Field mustard	cytosol	17.16	22.38

Protein Annotations

EnsemblPlants:Bra022669.1	EnsemblPlants:Bra022669.1-P	EnsemblPlantsGene:Bra022669	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3
PFAM:PF03478	SEG:seg	UniParc:UPI0002546BF5	UniProt:M4E1L9	MapMan:35.2	:

Description

AT5G53790 (E=7e-109) | unknown protein

Coordinates

chrA02:-:8140311..8141617

Molecular Weight (calculated)

42891.2 Da

IEP (calculated)

5.132

GRAVY (calculated)

-0.256

Length

373 amino acids

Sequence
(BLAST)

001: MSLLFNIVEK LFVQEGDKDR FFTCPRKTPY MLVDVTVGED ESSTDEENKI TDYWVYNPRS EKIINITGKK FPKVLSGGGL LLGGSRGWAI FMSYPDYTIH
101: LSQVFNPWCT ESSPKTITLP PLTDHLVPHV EMNGNVSLST YFPNQDDDYI VCFTIFGSKL CYCMPNRDSD WATIDIPFSY DIDSNVIYSQ KDQMFYLLAT
201: GCAYMAALDL KNNKKKPKFM RLQFENFPLI PQYEWEILAS CLQSGYIAES SSGERFIVQW YVVTVKLSNR EKLKESTKRF MVFRIEDDGG QLYQGTRIIA
301: NYTENIGDLC IFIGENETFC LEASKFPGLR PNSIYYVRYG FGVYDIGKKS SREYDLNGFP CIQGRTLFLS PLH

Best Arabidopsis Sequence Match ( AT5G53790.1 )
(BLAST)

001: MSLLFGLVAK HSVEESDAVR FCSYPRQTPY MLFNCSLGNV DRYSNITISY NIFNPRNEKI IKITDKVFVK SLPDPEQFVL LGTSRSWAAF TRIHDTIIFL
101: TDVFNPWSSE SSTRTITLPP LVSNGIKASV SLSTPSPDDD NDYIVSVSFF RSKLYYCMPN RDSEWTSTNI PFSCDFNSQV VYSRKRQMFY LLTTGCAYIA
201: ALDLKNNKDP TFLQIQFQNF PLIPQHEWEI LASCLRSDYI AESSSGERFI VQWYLTYVVE PWGNGNITKV FRETKRFMVF KEEEEHKFQR RKMIANYTEN
301: IGDLCIFIGR NETFCLEASK YPGLRRNSIY YTGHGFGVYD IRKKSFREYD SNLTKESKLS SISFIAKYQP VSTNRVLGFD

Arabidopsis Description

F-box protein, putative (DUF295) [Source:UniProtKB/TrEMBL;Acc:Q9FHZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.