Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28820 | Canola | cytosol | 55.79 | 56.84 |
| Bra022669.1-P | Field mustard | cytosol | 55.79 | 56.84 |
| AT5G67040.1 | Thale cress | mitochondrion | 16.58 | 38.18 |
| AT5G53780.1 | Thale cress | cytosol | 34.74 | 35.11 |
| AT1G05540.1 | Thale cress | mitochondrion | 31.32 | 32.43 |
| AT5G55440.1 | Thale cress | mitochondrion | 30.79 | 32.05 |
| AT1G30170.1 | Thale cress | mitochondrion | 30.53 | 31.69 |
| AT5G46140.1 | Thale cress | cytosol | 23.42 | 30.8 |
| AT1G30160.2 | Thale cress | mitochondrion | 29.21 | 30.33 |
| AT5G03390.1 | Thale cress | mitochondrion | 29.21 | 29.76 |
| AT4G16080.1 | Thale cress | mitochondrion | 26.32 | 28.25 |
| AT1G68960.1 | Thale cress | mitochondrion | 27.37 | 27.66 |
| AT1G05550.3 | Thale cress | cytosol | 27.63 | 27.27 |
| AT4G25920.1 | Thale cress | mitochondrion, plastid | 27.89 | 27.18 |
| AT5G46130.1 | Thale cress | mitochondrion | 26.84 | 27.13 |
| AT2G45940.2 | Thale cress | cytosol | 25.79 | 26.85 |
| AT4G25930.1 | Thale cress | mitochondrion | 25.79 | 26.7 |
| AT4G14260.1 | Thale cress | nucleus | 23.95 | 24.01 |
| AT4G16090.1 | Thale cress | mitochondrion | 16.58 | 23.51 |
| AT2G45930.1 | Thale cress | mitochondrion | 11.58 | 18.41 |
Protein Annotations
| ArrayExpress:AT5G53790 | EnsemblPlants:AT5G53790.1 | EnsemblPlantsGene:AT5G53790 | EntrezGene:835460 | InterPro:DUF295 | PANTHER:PTHR31681 |
| PANTHER:PTHR31681:SF3 | PFAM:PF03478 | ProteinID:AED96407.1 | ProteinID:BAB09551.1 | RefSeq:AT5G53790 | RefSeq:AT5G53790-TAIR-G |
| RefSeq:NP_200190.1 | TAIR:AT5G53790 | TAIR:AT5G53790.1 | Unigene:At.55534 | UniParc:UPI000009D8B8 | UniProt:Q9FHZ7 |
| MapMan:35.2 | : | : | : | : | : |
Description
F-box protein, putative (DUF295) [Source:UniProtKB/TrEMBL;Acc:Q9FHZ7]
Coordinates
chr5:+:21843501..21845261
Molecular Weight (calculated)
44078.3 Da
IEP (calculated)
8.345
GRAVY (calculated)
-0.311
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLLFGLVAK HSVEESDAVR FCSYPRQTPY MLFNCSLGNV DRYSNITISY NIFNPRNEKI IKITDKVFVK SLPDPEQFVL LGTSRSWAAF TRIHDTIIFL
101: TDVFNPWSSE SSTRTITLPP LVSNGIKASV SLSTPSPDDD NDYIVSVSFF RSKLYYCMPN RDSEWTSTNI PFSCDFNSQV VYSRKRQMFY LLTTGCAYIA
201: ALDLKNNKDP TFLQIQFQNF PLIPQHEWEI LASCLRSDYI AESSSGERFI VQWYLTYVVE PWGNGNITKV FRETKRFMVF KEEEEHKFQR RKMIANYTEN
301: IGDLCIFIGR NETFCLEASK YPGLRRNSIY YTGHGFGVYD IRKKSFREYD SNLTKESKLS SISFIAKYQP VSTNRVLGFD
101: TDVFNPWSSE SSTRTITLPP LVSNGIKASV SLSTPSPDDD NDYIVSVSFF RSKLYYCMPN RDSEWTSTNI PFSCDFNSQV VYSRKRQMFY LLTTGCAYIA
201: ALDLKNNKDP TFLQIQFQNF PLIPQHEWEI LASCLRSDYI AESSSGERFI VQWYLTYVVE PWGNGNITKV FRETKRFMVF KEEEEHKFQR RKMIANYTEN
301: IGDLCIFIGR NETFCLEASK YPGLRRNSIY YTGHGFGVYD IRKKSFREYD SNLTKESKLS SISFIAKYQP VSTNRVLGFD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.