Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 1
- mitochondrion 3
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040901.1-P | Field mustard | mitochondrion | 67.88 | 30.94 |
| AT5G55440.1 | Thale cress | mitochondrion | 66.06 | 29.86 |
| CDY02744 | Canola | mitochondrion | 30.91 | 21.89 |
| AT5G46140.1 | Thale cress | cytosol | 36.36 | 20.76 |
| AT5G53780.1 | Thale cress | cytosol | 45.45 | 19.95 |
| AT2G45940.2 | Thale cress | cytosol | 43.64 | 19.73 |
| AT4G16080.1 | Thale cress | mitochondrion | 41.82 | 19.49 |
| AT1G30170.1 | Thale cress | mitochondrion | 41.82 | 18.85 |
| AT1G05540.1 | Thale cress | mitochondrion | 41.82 | 18.8 |
| AT1G05550.3 | Thale cress | cytosol | 41.21 | 17.66 |
| AT4G25920.1 | Thale cress | mitochondrion, plastid | 41.21 | 17.44 |
| AT5G46130.1 | Thale cress | mitochondrion | 39.39 | 17.29 |
| AT1G30160.2 | Thale cress | mitochondrion | 38.18 | 17.21 |
| AT4G14260.1 | Thale cress | nucleus | 38.79 | 16.89 |
| AT5G53790.1 | Thale cress | cytosol | 38.18 | 16.58 |
| AT5G03390.1 | Thale cress | mitochondrion | 36.36 | 16.09 |
| AT4G25930.1 | Thale cress | mitochondrion | 34.55 | 15.53 |
| AT1G68960.1 | Thale cress | mitochondrion | 35.15 | 15.43 |
| AT4G16090.1 | Thale cress | mitochondrion | 11.52 | 7.09 |
| AT2G45930.1 | Thale cress | mitochondrion | 1.21 | 0.84 |
Protein Annotations
| ArrayExpress:AT5G67040 | EnsemblPlants:AT5G67040.1 | EnsemblPlantsGene:AT5G67040 | EntrezGene:836839 | InterPro:DUF295 | PANTHER:PTHR31681 |
| PANTHER:PTHR31681:SF3 | PFAM:PF03478 | ProteinID:AED98294.1 | ProteinID:BAB08943.1 | RefSeq:AT5G67040 | RefSeq:AT5G67040-TAIR-G |
| RefSeq:NP_201505.1 | SEG:seg | TAIR:AT5G67040 | TAIR:AT5G67040.1 | Unigene:At.65710 | UniParc:UPI00000A4868 |
| UniProt:Q9FGC6 | MapMan:35.2 | : | : | : | : |
Description
F-box protein, putative (DUF295) [Source:UniProtKB/TrEMBL;Acc:Q9FGC6]
Coordinates
chr5:-:26757896..26758475
Molecular Weight (calculated)
18763.4 Da
IEP (calculated)
6.595
GRAVY (calculated)
-0.379
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLHLNSNN NKLKYQKLRL SNLPKIPDAG REMLDQCFMS KHLVESPSGE LFLVNWYAQC IHTEEKDGEV EGLHSKTKRF MVFREDEKSK DFSYTEDIGD
101: LCIFLGASEA FCLTASMYPG LKPNSIYYIG HGLGSYDLTS GTVHSFYPPH APMLNHVPYW IPSHL
101: LCIFLGASEA FCLTASMYPG LKPNSIYYIG HGLGSYDLTS GTVHSFYPPH APMLNHVPYW IPSHL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.