Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G45940.2 | Thale cress | cytosol | 67.51 | 65.48 |
| CDX95667 | Canola | mitochondrion, plastid | 64.97 | 60.37 |
| CDX83388 | Canola | plastid | 64.69 | 59.79 |
| Bra000405.1-P | Field mustard | plastid | 63.84 | 58.7 |
| AT5G67040.1 | Thale cress | mitochondrion | 19.49 | 41.82 |
| AT1G05540.1 | Thale cress | mitochondrion | 42.94 | 41.42 |
| AT1G30170.1 | Thale cress | mitochondrion | 42.37 | 40.98 |
| AT1G30160.2 | Thale cress | mitochondrion | 39.55 | 38.25 |
| AT4G16090.1 | Thale cress | mitochondrion | 28.25 | 37.31 |
| AT1G05550.3 | Thale cress | cytosol | 36.16 | 33.25 |
| AT5G46140.1 | Thale cress | cytosol | 26.84 | 32.87 |
| AT2G45930.1 | Thale cress | mitochondrion | 22.03 | 32.64 |
| AT5G55440.1 | Thale cress | mitochondrion | 32.49 | 31.51 |
| AT4G14260.1 | Thale cress | nucleus | 33.62 | 31.4 |
| AT4G25930.1 | Thale cress | mitochondrion | 31.64 | 30.52 |
| AT5G46130.1 | Thale cress | mitochondrion | 32.2 | 30.32 |
| AT1G68960.1 | Thale cress | mitochondrion | 31.36 | 29.52 |
| AT4G25920.1 | Thale cress | mitochondrion, plastid | 31.36 | 28.46 |
| AT5G53780.1 | Thale cress | cytosol | 29.1 | 27.39 |
| AT5G53790.1 | Thale cress | cytosol | 28.25 | 26.32 |
| AT5G03390.1 | Thale cress | mitochondrion | 26.55 | 25.2 |
Protein Annotations
| ArrayExpress:AT4G16080 | EnsemblPlants:AT4G16080.1 | EnsemblPlantsGene:AT4G16080 | EntrezGene:827293 | InterPro:DUF295 | PANTHER:PTHR31681 |
| PANTHER:PTHR31681:SF3 | PFAM:PF03478 | PO:PO:0000005 | ProteinID:AEE83690.1 | RefSeq:AT4G16080 | RefSeq:AT4G16080-TAIR-G |
| RefSeq:NP_193343.3 | SEG:seg | TAIR:AT4G16080 | TAIR:AT4G16080.1 | Unigene:At.54349 | UniParc:UPI00017393DE |
| UniProt:F4JL02 | MapMan:35.2 | : | : | : | : |
Description
Protein of unknown function (DUF295) [Source:TAIR;Acc:AT4G16080]
Coordinates
chr4:-:9101348..9102887
Molecular Weight (calculated)
40093.7 Da
IEP (calculated)
6.594
GRAVY (calculated)
-0.342
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSLLIPQR CNTFRMFSSS TTNPFLLHHA IPCGEEAQRT EFLMLDPAKE DYFTTVDKPL PKNLIKSKLV GSSHGWGVYL SSPDYILISN YPSRSKSNPK
101: IIDLPPRPSL NGSQTELVSG VAMSSSPEEE ECIIAVKYMG RPVSIYTPGQ DSQGFLLAMS TRLFDYFEQS KLMYSKRDQR FYMPSSGGHH LWSWVGLPST
201: TPQYHELKFH NLPQFSHSEL QLFDSCYRAH ELVESPSGQR FLLKWYVESP ANKSLVFNCG GTKRFMVFRE EEDMNMCYTE DIGDLCIFLG NNEPFCVKAS
301: SFPGLNPNSI YFLGEGYGVY DIATRSPRSF TPKSTPSSSS EQIVLPYWIP PMSL
101: IIDLPPRPSL NGSQTELVSG VAMSSSPEEE ECIIAVKYMG RPVSIYTPGQ DSQGFLLAMS TRLFDYFEQS KLMYSKRDQR FYMPSSGGHH LWSWVGLPST
201: TPQYHELKFH NLPQFSHSEL QLFDSCYRAH ELVESPSGQR FLLKWYVESP ANKSLVFNCG GTKRFMVFRE EEDMNMCYTE DIGDLCIFLG NNEPFCVKAS
301: SFPGLNPNSI YFLGEGYGVY DIATRSPRSF TPKSTPSSSS EQIVLPYWIP PMSL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.