Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G25920.1 | Thale cress | mitochondrion, plastid | 49.08 | 47.69 |
| AT5G46140.1 | Thale cress | cytosol | 30.08 | 39.45 |
| AT5G67040.1 | Thale cress | mitochondrion | 16.89 | 38.79 |
| AT5G46130.1 | Thale cress | mitochondrion | 36.15 | 36.44 |
| AT4G25930.1 | Thale cress | mitochondrion | 32.98 | 34.06 |
| AT1G05540.1 | Thale cress | mitochondrion | 32.72 | 33.79 |
| AT2G45940.2 | Thale cress | cytosol | 32.45 | 33.7 |
| AT4G16080.1 | Thale cress | mitochondrion | 31.4 | 33.62 |
| AT1G30170.1 | Thale cress | mitochondrion | 32.19 | 33.33 |
| AT1G30160.2 | Thale cress | mitochondrion | 32.19 | 33.33 |
| AT5G55440.1 | Thale cress | mitochondrion | 29.55 | 30.68 |
| AT1G05550.3 | Thale cress | cytosol | 29.29 | 28.83 |
| AT1G68960.1 | Thale cress | mitochondrion | 27.7 | 27.93 |
| AT4G16090.1 | Thale cress | mitochondrion | 19.26 | 27.24 |
| AT5G53780.1 | Thale cress | cytosol | 25.33 | 25.53 |
| AT5G03390.1 | Thale cress | mitochondrion | 24.54 | 24.93 |
| AT5G53790.1 | Thale cress | cytosol | 24.01 | 23.95 |
| AT2G45930.1 | Thale cress | mitochondrion | 12.93 | 20.5 |
Protein Annotations
| ArrayExpress:AT4G14260 | EnsemblPlants:AT4G14260.1 | EnsemblPlantsGene:AT4G14260 | EntrezGene:827067 | InterPro:DUF295 | PANTHER:PTHR31681 |
| PANTHER:PTHR31681:SF3 | PFAM:PF03478 | ProteinID:AEE83404.1 | RefSeq:AT4G14260 | RefSeq:AT4G14260-TAIR-G | RefSeq:NP_567424.1 |
| TAIR:AT4G14260 | TAIR:AT4G14260.1 | Unigene:At.54315 | UniParc:UPI0000162A39 | UniProt:F4JUP0 | MapMan:35.2 |
Description
Protein of unknown function (DUF295) [Source:TAIR;Acc:AT4G14260]
Coordinates
chr4:-:8216321..8217571
Molecular Weight (calculated)
42808.6 Da
IEP (calculated)
5.421
GRAVY (calculated)
-0.338
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSSTTSHTS GWDSDDETKV TQLLSSEPAY PFLLIEYITN IQNSSSDGRV IVYDDDSSKG KATKVTIKDK KLEKEVIEAM TVGFLRDGLK FYLSYRSSDH
101: QPVITYETSN PKLENLTIHL PSVPTGTKIH NLAMSSIPVQ DKDWVVGVKL SGSRVSLCRP FGSSKWINMK FMSQCINPLS SLMFSKRDQR FYIPSYGGNY
201: LCYLDLNSKE GDDHFNSRQE NGQPSFIDLD YENLPESVFK QLAGVSSCSK TDHLVESPTG QLFLVKWFVE DVEDLCDNTP MHVTKKFMVF RANEASDEKK
301: KTMIYTEHIG DLCIFLGHSE AFCIPASTSC GLEPNCIYFV GNNFGVYDLT TETCSTFYTS VRPLKNVSFP YWPPPTPIY
101: QPVITYETSN PKLENLTIHL PSVPTGTKIH NLAMSSIPVQ DKDWVVGVKL SGSRVSLCRP FGSSKWINMK FMSQCINPLS SLMFSKRDQR FYIPSYGGNY
201: LCYLDLNSKE GDDHFNSRQE NGQPSFIDLD YENLPESVFK QLAGVSSCSK TDHLVESPTG QLFLVKWFVE DVEDLCDNTP MHVTKKFMVF RANEASDEKK
301: KTMIYTEHIG DLCIFLGHSE AFCIPASTSC GLEPNCIYFV GNNFGVYDLT TETCSTFYTS VRPLKNVSFP YWPPPTPIY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.