Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G16080.1 | Thale cress | mitochondrion | 65.48 | 67.51 |
| CDX95667 | Canola | mitochondrion, plastid | 67.12 | 64.3 |
| CDX83388 | Canola | plastid | 65.75 | 62.66 |
| Bra000405.1-P | Field mustard | plastid | 65.75 | 62.34 |
| AT1G05540.1 | Thale cress | mitochondrion | 44.11 | 43.87 |
| AT5G67040.1 | Thale cress | mitochondrion | 19.73 | 43.64 |
| AT1G30170.1 | Thale cress | mitochondrion | 41.1 | 40.98 |
| AT4G16090.1 | Thale cress | mitochondrion | 28.77 | 39.18 |
| AT1G30160.2 | Thale cress | mitochondrion | 39.18 | 39.07 |
| AT2G45930.1 | Thale cress | mitochondrion | 23.56 | 35.98 |
| AT1G05550.3 | Thale cress | cytosol | 36.99 | 35.06 |
| AT5G46140.1 | Thale cress | cytosol | 27.67 | 34.95 |
| AT4G14260.1 | Thale cress | nucleus | 33.7 | 32.45 |
| AT4G25930.1 | Thale cress | mitochondrion | 31.51 | 31.34 |
| AT5G55440.1 | Thale cress | mitochondrion | 30.96 | 30.96 |
| AT5G46130.1 | Thale cress | mitochondrion | 30.96 | 30.05 |
| AT1G68960.1 | Thale cress | mitochondrion | 30.96 | 30.05 |
| AT5G53780.1 | Thale cress | cytosol | 30.14 | 29.26 |
| AT4G25920.1 | Thale cress | mitochondrion, plastid | 30.68 | 28.72 |
| AT5G03390.1 | Thale cress | mitochondrion | 26.85 | 26.27 |
| AT5G53790.1 | Thale cress | cytosol | 26.85 | 25.79 |
Protein Annotations
| MapMan:35.2 | EntrezGene:819202 | UniProt:A0A178VQ73 | UniProt:A0A1P8AZX5 | ProteinID:AEC10619.1 | ProteinID:ANM62180.1 |
| ArrayExpress:AT2G45940 | EnsemblPlantsGene:AT2G45940 | RefSeq:AT2G45940 | TAIR:AT2G45940 | RefSeq:AT2G45940-TAIR-G | EnsemblPlants:AT2G45940.2 |
| EMBL:AY501352 | EMBL:AY649294 | Unigene:At.49380 | InterPro:DUF295 | GO:GO:0003674 | GO:GO:0005575 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_001324357.1 | RefSeq:NP_182118.3 | ProteinID:OAP07946.1 |
| PFAM:PF03478 | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF3 | UniParc:UPI0007E04B1C | : | : |
Description
Protein of unknown function (DUF295) [Source:TAIR;Acc:AT2G45940]
Coordinates
chr2:+:18902963..18904181
Molecular Weight (calculated)
41665.1 Da
IEP (calculated)
6.947
GRAVY (calculated)
-0.455
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSSSSTTTN PYLMYYVTYS DEAPQAGAMT ELRMFDPAKE EYFTVHDKPL PKELVKSRLV GSSHGWGVFL GSPNSILISD YCNPSSSKSN PKMIPLPPRS
101: YEHSCQNELV SGVAMSSSPE EEDFVMAVKF TGRRVSIYRP GQHRKGNHRF SSTELFDYFE QANLMYSKRD QRFYMPSSGG HHLWSWDGII STDSQYHDLR
201: FHNLPQFSLS ELQLLRSCYR TQHLVESPSG QRFLVKWSVQ TLGRSVQSLA HRSVEFSFGG TKLFMVFREE EDMNMCYTQD IGDLCIFLGN NEPFCVKASS
301: FPGLNPNSIY FIGDRYGEGY GVYDIATRTP RSFNPKSFSA FSDLPNGQGY VLPNWLPHWI PPFPL
101: YEHSCQNELV SGVAMSSSPE EEDFVMAVKF TGRRVSIYRP GQHRKGNHRF SSTELFDYFE QANLMYSKRD QRFYMPSSGG HHLWSWDGII STDSQYHDLR
201: FHNLPQFSLS ELQLLRSCYR TQHLVESPSG QRFLVKWSVQ TLGRSVQSLA HRSVEFSFGG TKLFMVFREE EDMNMCYTQD IGDLCIFLGN NEPFCVKASS
301: FPGLNPNSIY FIGDRYGEGY GVYDIATRTP RSFNPKSFSA FSDLPNGQGY VLPNWLPHWI PPFPL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.