Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 4
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83388 | Canola | plastid | 84.51 | 84.07 |
| AT2G45940.2 | Thale cress | cytosol | 64.3 | 67.12 |
| AT4G16080.1 | Thale cress | mitochondrion | 60.37 | 64.97 |
| CDX86571 | Canola | cytosol | 11.29 | 50.0 |
| CDX95668 | Canola | mitochondrion | 47.77 | 47.64 |
| CDX83387 | Canola | cytosol | 43.04 | 45.3 |
| CDY47276 | Canola | mitochondrion | 43.04 | 44.57 |
| CDY51469 | Canola | mitochondrion | 42.52 | 44.26 |
| CDY57749 | Canola | mitochondrion | 40.68 | 44.03 |
| CDY10119 | Canola | mitochondrion | 42.52 | 44.02 |
| CDX90231 | Canola | mitochondrion | 42.26 | 43.99 |
| CDY10120 | Canola | mitochondrion | 38.85 | 43.79 |
| CDX98187 | Canola | mitochondrion | 40.94 | 42.74 |
| CDY43323 | Canola | mitochondrion | 41.21 | 42.2 |
| CDY57750 | Canola | plastid | 41.21 | 42.09 |
| CDX90173 | Canola | mitochondrion | 40.68 | 41.67 |
| CDY47275 | Canola | cytosol | 41.47 | 41.15 |
| CDX99887 | Canola | extracellular, plasma membrane | 38.06 | 40.85 |
| CDY50787 | Canola | cytosol | 34.38 | 40.43 |
| CDX86573 | Canola | mitochondrion | 38.06 | 39.94 |
| CDX90232 | Canola | mitochondrion | 37.27 | 39.89 |
| CDX99797 | Canola | plastid | 39.11 | 39.84 |
| CDY51468 | Canola | mitochondrion | 37.27 | 39.44 |
| CDX99886 | Canola | cytosol | 22.31 | 38.99 |
| CDY65427 | Canola | cytosol | 19.68 | 38.86 |
| CDY15545 | Canola | mitochondrion | 33.86 | 38.74 |
| CDX99796 | Canola | mitochondrion | 40.16 | 38.54 |
| CDY15546 | Canola | plastid | 38.32 | 37.34 |
| CDY59993 | Canola | cytosol, plastid | 25.98 | 36.26 |
| CDX86572 | Canola | mitochondrion | 16.54 | 35.59 |
| CDY23447 | Canola | mitochondrion | 17.85 | 34.69 |
| CDX95813 | Canola | mitochondrion | 28.08 | 33.97 |
| CDY65207 | Canola | mitochondrion | 28.61 | 33.85 |
| CDY27327 | Canola | cytosol | 15.22 | 32.95 |
| CDX94769 | Canola | cytosol | 31.23 | 31.9 |
| CDY02744 | Canola | mitochondrion | 19.42 | 31.76 |
| CDY28820 | Canola | cytosol | 30.97 | 31.64 |
| CDY48999 | Canola | cytosol | 31.23 | 30.67 |
| CDX92018 | Canola | mitochondrion | 29.66 | 28.9 |
| CDY35144 | Canola | mitochondrion | 23.88 | 28.8 |
| CDX95970 | Canola | mitochondrion | 27.82 | 28.65 |
| CDY33565 | Canola | plastid | 28.35 | 28.42 |
| CDY03244 | Canola | cytosol | 18.9 | 28.24 |
| CDX92019 | Canola | mitochondrion | 29.4 | 28.07 |
| CDY28818 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 27.82 | 27.75 |
| CDY71779 | Canola | mitochondrion | 25.46 | 27.56 |
| CDY53420 | Canola | cytosol | 23.88 | 27.08 |
| CDY41583 | Canola | mitochondrion | 15.22 | 25.11 |
| CDY10122 | Canola | mitochondrion | 44.62 | 23.45 |
Protein Annotations
| EnsemblPlants:CDX95667 | EnsemblPlantsGene:GSBRNA2T00101553001 | InterPro:DUF295 | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF3 | PFAM:PF03478 |
| ProteinID:CDX95667 | ProteinID:CDX95667.1 | SEG:seg | UniParc:UPI0004EF0568 | MapMan:35.2 | : |
Description
BnaC03g25480D
Coordinates
chrLK031890:-:555203..556806
Molecular Weight (calculated)
42857.0 Da
IEP (calculated)
7.396
GRAVY (calculated)
-0.318
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSLLLSLS SKPSLRKLAL RCQTLRTFSS SSANPYLLYR VTCCGGKGDE ESPGVMTQLH TFDPAKDEHI IVGDKPFPKE LVGSSLVGSS HGWGVFLWGQ
101: RSILISDFCN PLSFKSKPKF IRLLPRPDLI SCQSDLVSGV AMSSSPQEEE DYLVAVKFTG RPVSIYKPSD TKAVHLTLPH NVFDHFEPSK LMHSKRDQRF
201: YMPSSGGHHL WSWDGHESTE PEFHELRFHN LPQFSHSELQ LLDSCHRTQH LVESSSGQRF LVKWYVQSIK ALGFNCGGTK RFMVFREEED MNMCYTEDIG
301: DLCIFLGNNE PFCVKASLFP GLNSNSIYFV GEAYGEGYGV YNIATRTPRS FKPKPTTSDS PSGQGFMLPL WAPHWLPPFP L
101: RSILISDFCN PLSFKSKPKF IRLLPRPDLI SCQSDLVSGV AMSSSPQEEE DYLVAVKFTG RPVSIYKPSD TKAVHLTLPH NVFDHFEPSK LMHSKRDQRF
201: YMPSSGGHHL WSWDGHESTE PEFHELRFHN LPQFSHSELQ LLDSCHRTQH LVESSSGQRF LVKWYVQSIK ALGFNCGGTK RFMVFREEED MNMCYTEDIG
301: DLCIFLGNNE PFCVKASLFP GLNSNSIYFV GEAYGEGYGV YNIATRTPRS FKPKPTTSDS PSGQGFMLPL WAPHWLPPFP L
001: MFSSSSTTTN PYLMYYVTYS DEAPQAGAMT ELRMFDPAKE EYFTVHDKPL PKELVKSRLV GSSHGWGVFL GSPNSILISD YCNPSSSKSN PKMIPLPPRS
101: YEHSCQNELV SGVAMSSSPE EEDFVMAVKF TGRRVSIYRP GQHRKGNHRF SSTELFDYFE QANLMYSKRD QRFYMPSSGG HHLWSWDGII STDSQYHDLR
201: FHNLPQFSLS ELQLLRSCYR TQHLVESPSG QRFLVKWSVQ TLGRSVQSLA HRSVEFSFGG TKLFMVFREE EDMNMCYTQD IGDLCIFLGN NEPFCVKASS
301: FPGLNPNSIY FIGDRYGEGY GVYDIATRTP RSFNPKSFSA FSDLPNGQGY VLPNWLPHWI PPFPL
101: YEHSCQNELV SGVAMSSSPE EEDFVMAVKF TGRRVSIYRP GQHRKGNHRF SSTELFDYFE QANLMYSKRD QRFYMPSSGG HHLWSWDGII STDSQYHDLR
201: FHNLPQFSLS ELQLLRSCYR TQHLVESPSG QRFLVKWSVQ TLGRSVQSLA HRSVEFSFGG TKLFMVFREE EDMNMCYTQD IGDLCIFLGN NEPFCVKASS
301: FPGLNPNSIY FIGDRYGEGY GVYDIATRTP RSFNPKSFSA FSDLPNGQGY VLPNWLPHWI PPFPL
Arabidopsis Description
Protein of unknown function (DUF295) [Source:TAIR;Acc:AT2G45940]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.