CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51469	Canola	mitochondrion	67.61	65.57
CDX90231	Canola	mitochondrion	66.76	64.75
CDX86571	Canola	cytosol	12.11	50.0
CDY10120	Canola	mitochondrion	43.1	45.27
CDX86572	Canola	mitochondrion	22.54	45.2
CDY57750	Canola	plastid	47.32	45.04
CDX86573	Canola	mitochondrion	44.23	43.25
CDY50787	Canola	cytosol	39.15	42.9
CDY51468	Canola	mitochondrion	42.82	42.22
CDX90232	Canola	mitochondrion	42.25	42.13
CDX99796	Canola	mitochondrion	46.76	41.81
CDY15545	Canola	mitochondrion	39.15	41.74
CDY57749	Canola	mitochondrion	41.13	41.48
CDX99797	Canola	plastid	43.66	41.44
CDY47275	Canola	cytosol	44.79	41.41
CDY10119	Canola	mitochondrion	41.97	40.49
CDX98187	Canola	mitochondrion	41.41	40.27
CDY43323	Canola	mitochondrion	41.97	40.05
CDX99886	Canola	cytosol	24.51	39.91
CDX90173	Canola	mitochondrion	41.41	39.52
CDY47276	Canola	mitochondrion	40.28	38.86
CDX95667	Canola	mitochondrion, plastid	40.85	38.06
CDX83388	Canola	plastid	39.44	36.55
CDY15546	Canola	plastid	38.59	35.04
CDY23447	Canola	mitochondrion	19.15	34.69
CDY02744	Canola	mitochondrion	22.25	33.91
CDX95668	Canola	mitochondrion	36.06	33.51
CDX83387	Canola	cytosol	34.08	33.43
CDY65427	Canola	cytosol	17.46	32.12
CDX95813	Canola	mitochondrion	28.17	31.75
CDY59993	Canola	cytosol, plastid	23.94	31.14
CDY65207	Canola	mitochondrion	28.17	31.06
CDY48999	Canola	cytosol	30.42	27.84
CDX94769	Canola	cytosol	29.01	27.61
CDY28820	Canola	cytosol	28.73	27.35
CDY27327	Canola	cytosol	13.52	27.27
CDY53420	Canola	cytosol	25.63	27.08
CDY03244	Canola	cytosol	19.44	27.06
CDX92018	Canola	mitochondrion	28.45	25.83
CDY71779	Canola	mitochondrion	25.35	25.57
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	27.04	25.13
CDX92019	Canola	mitochondrion	27.61	24.56
CDX95970	Canola	mitochondrion	24.51	23.51
CDY33565	Canola	plastid	24.51	22.89
CDY35144	Canola	mitochondrion	20.28	22.78
CDY41583	Canola	mitochondrion	14.65	22.51
CDY10122	Canola	mitochondrion	44.79	21.93

Protein Annotations

EnsemblPlants:CDX99887	EnsemblPlantsGene:GSBRNA2T00108662001	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3	PFAM:PF03478
ProteinID:CDX99887	ProteinID:CDX99887.1	SEG:seg	UniParc:UPI0004EE2051	MapMan:35.2	:

Description

BnaC05g23090D

Coordinates

chrLK031914:+:1172940..1174116

Molecular Weight (calculated)

40149.1 Da

IEP (calculated)

5.097

GRAVY (calculated)

-0.147

Length

355 amino acids

Sequence
(BLAST)

001: MLREDDLLLF VIVLLTWKMH KRRSVRSFSF SMTGPYLSLC VGAKPLPEGG NIGEVVLFDP AKTELLVLTE KAIPDEIVLA KGLGASKGWA FFCDPQDRCV
101: HITDFMNPWA CKSNPKLFTL PPLTSLPSCQ TNAVCNAAMS ACPDDDKDWV VAIKSLGDQL SFCRPRRDLR WTKITTPLDY FPTSNLMHSK RDGRFYLPGP
201: GGHHLLSYDL NFDKQGYQPE FHELQFRNFP KSFESELELS ELFPCSARTN TSYANSRLAS KEISYETQQF MVFKEEETTE GRFMCYTDDI GDTCIFISKG
301: EDFCVQVSCF PGLEPNSIYF LGFGLGVYDL TSKTASSFLD PSVTLNQLMV SYWLI

Best Arabidopsis Sequence Match ( AT1G30170.1 )
(BLAST)

001: MSRLLSKLSP LIHKRSVRSF SSSTTGPYLQ LSLSAKPSSE GVVNIGEIVL YDPAKQELLN LTDKPIPEEI VTAKWIGASK GWAFFLDTQD RCVLITDSLN
101: PWACKSNPKL LTLPPLNPLF SCQTDVIWNV AMSSCPDDDE DWVVGIKSLG DQVSFCRPRR DLRWTKFQTP SDHFPTSNLT YSKRDRKFYL PGPGGHHLLS
201: YDLDFNKADQ PEFHELQFRN FPESLKYDSE LSELFPSSCR TERFVESPSG DERFLVKWYA KGCLASSSKI TYETQRFMVF REEETTEERF MCYTDDIGDL
301: CIFVSKSEAF CVPASSYPGL KPNSIYFVGF GLGIYDLTTR NVSIFRAPKG ALNQIVSPYW FPPASS

Arabidopsis Description

Uncharacterized protein T2H7.3 [Source:UniProtKB/TrEMBL;Acc:Q9C6Z8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.