CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15545	Canola	mitochondrion	82.09	89.49
CDX86571	Canola	cytosol	20.66	87.21
CDX86572	Canola	mitochondrion	39.67	81.36
CDY10120	Canola	mitochondrion	62.53	67.16
CDY47275	Canola	cytosol	68.32	64.58
AT1G05550.3	Thale cress	cytosol	63.36	59.74
CDY57750	Canola	plastid	52.07	50.67
CDY10119	Canola	mitochondrion	51.24	50.54
CDY43323	Canola	mitochondrion	51.24	50.0
CDX90173	Canola	mitochondrion	50.96	49.73
CDY47276	Canola	mitochondrion	50.14	49.46
CDY51469	Canola	mitochondrion	49.04	48.63
CDX90231	Canola	mitochondrion	49.04	48.63
CDY57749	Canola	mitochondrion	46.01	47.44
CDY50787	Canola	cytosol	41.87	46.91
CDX99796	Canola	mitochondrion	50.14	45.84
CDX99797	Canola	plastid	47.11	45.72
CDX98187	Canola	mitochondrion	44.9	44.66
CDX99887	Canola	extracellular, plasma membrane	43.25	44.23
CDX99886	Canola	cytosol	25.07	41.74
CDX90232	Canola	mitochondrion	39.94	40.73
CDY51468	Canola	mitochondrion	39.67	40.0
CDY15546	Canola	plastid	42.7	39.64
CDX83388	Canola	plastid	40.22	38.12
CDX95667	Canola	mitochondrion, plastid	39.94	38.06
CDX83387	Canola	cytosol	37.19	37.29
CDX95668	Canola	mitochondrion	38.57	36.65
CDY59993	Canola	cytosol, plastid	27.0	35.9
CDY65427	Canola	cytosol	17.91	33.68
CDX95813	Canola	mitochondrion	28.65	33.02
CDY23447	Canola	mitochondrion	17.36	32.14
CDY28820	Canola	cytosol	32.78	31.9
CDY02744	Canola	mitochondrion	20.39	31.76
CDY41583	Canola	mitochondrion	20.11	31.6
CDY71779	Canola	mitochondrion	30.03	30.97
CDY65207	Canola	mitochondrion	27.27	30.75
CDY33565	Canola	plastid	31.68	30.26
CDX95970	Canola	mitochondrion	30.58	30.0
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	31.41	29.84
CDX94769	Canola	cytosol	30.03	29.22
CDY10122	Canola	mitochondrion	58.13	29.1
CDY48999	Canola	cytosol	30.58	28.61
CDY27327	Canola	cytosol	13.5	27.84
CDY53420	Canola	cytosol	24.24	26.19
CDX92018	Canola	mitochondrion	28.1	26.09
CDY03244	Canola	cytosol	17.36	24.71
CDX92019	Canola	mitochondrion	25.9	23.56
CDY35144	Canola	mitochondrion	20.39	23.42

Protein Annotations

EnsemblPlants:CDX86573	EnsemblPlantsGene:GSBRNA2T00145200001	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3	PFAM:PF03478
ProteinID:CDX86573	ProteinID:CDX86573.1	UniParc:UPI0004EECF0E	MapMan:35.2	:	:

Description

BnaC08g01300D

Coordinates

chrLK031846:-:734709..736686

Molecular Weight (calculated)

41282.1 Da

IEP (calculated)

6.266

GRAVY (calculated)

-0.300

Length

363 amino acids

Sequence
(BLAST)

001: MSQLLIRLSA KLSSRNNNVC IHKCFRLFST GPYLTLGTRV QEVLPSGCKI GDVLLFDPAK EQILTLHDKT IPKELKDEEM IGTSHGWSFF YDRHDRIVRI
101: SDIFSPFASK SNPTVIPLPR LTDLPSEQIE QVCNVAMSSS SPLGDEDCVV AIKFSGDQLS LCRPGRDLEW TNILTPFHCC ENSNVMYSKR YKRFYLSAPG
201: GIHFFSYHLN ENTEHHKLVY RDHPELDQSE WKTLSMCSRR EYLVESSSSD ERYLVKWYAH GSYSSVLNGI DYQTKRFMVF SEEETAEGKF MCYTEDIGEM
301: CIFIASNETF CIPASSCPGL KPSTIYFMGH GFGSYDLTTG DTHHYKAPDG VITTPCWLPP VSI

Best Arabidopsis Sequence Match ( AT1G05550.3 )
(BLAST)

001: MAEVEPAAPS QPKNRKLATV LSIMLCNKLC RLTLFDRKCV LAFKMRWSMK RRLASTLTNL IGIQKSIRLF STSPYLTLGT RVKKILPAGC KIGDVLLFDP
101: TKEEIVTVPD KTIPEELMDE EMMGASHGWG FFCDRTDRSV RISDIFNPLA SKTNPVMIPL PRLTALPTGQ TEKVFNVAMS SSSPLGEEDC VVAIKFSGIQ
201: LSLCRPGCDL EWTNIVTPFN CLDTTQVSYD SPGLHELFYR DHPVLDQSEW ELLSSCSRTE YLVESPSGGD RFLVKWYALG FFSSNLKGIY HKTKGLMVFR
301: EEETTEGKIM CYTEDIGDMC IFLASNEAFC IPASSCLGLK PNCVYYMGRG FGFYDLTTGE AHHYKAPKGA PSALTAPYWL PPFAI

Arabidopsis Description

Protein of unknown function (DUF295) [Source:TAIR;Acc:AT1G05550]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.