Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G46140.1 | Thale cress | cytosol | 37.2 | 43.25 |
| CDY03244 | Canola | cytosol | 30.36 | 40.0 |
| CDX86571 | Canola | cytosol | 9.82 | 38.37 |
| CDY65427 | Canola | cytosol | 21.73 | 37.82 |
| AT5G46130.1 | Thale cress | mitochondrion | 40.77 | 36.44 |
| CDX94769 | Canola | cytosol | 38.39 | 34.58 |
| CDY48999 | Canola | cytosol | 39.29 | 34.02 |
| CDY35144 | Canola | mitochondrion | 30.95 | 32.91 |
| CDX99886 | Canola | cytosol | 20.24 | 31.19 |
| CDY51469 | Canola | mitochondrion | 30.95 | 28.42 |
| CDX90231 | Canola | mitochondrion | 30.95 | 28.42 |
| CDY10120 | Canola | mitochondrion | 28.27 | 28.11 |
| CDY50787 | Canola | cytosol | 27.08 | 28.09 |
| CDY59993 | Canola | cytosol, plastid | 22.32 | 27.47 |
| CDY10119 | Canola | mitochondrion | 30.06 | 27.45 |
| CDY57750 | Canola | plastid | 30.36 | 27.35 |
| CDY57749 | Canola | mitochondrion | 28.27 | 26.99 |
| CDX90232 | Canola | mitochondrion | 28.57 | 26.97 |
| CDY47276 | Canola | mitochondrion | 29.17 | 26.63 |
| CDX90173 | Canola | mitochondrion | 29.46 | 26.61 |
| CDX83387 | Canola | cytosol | 28.57 | 26.52 |
| CDY43323 | Canola | mitochondrion | 29.17 | 26.34 |
| CDY51468 | Canola | mitochondrion | 27.98 | 26.11 |
| CDX95668 | Canola | mitochondrion | 29.46 | 25.92 |
| CDY47275 | Canola | cytosol | 29.46 | 25.78 |
| CDX99887 | Canola | extracellular, plasma membrane | 27.08 | 25.63 |
| CDY23447 | Canola | mitochondrion | 14.88 | 25.51 |
| CDY27327 | Canola | cytosol | 13.1 | 25.0 |
| CDX99797 | Canola | plastid | 27.68 | 24.87 |
| CDX98187 | Canola | mitochondrion | 26.79 | 24.66 |
| CDX83388 | Canola | plastid | 27.98 | 24.54 |
| CDX86573 | Canola | mitochondrion | 26.19 | 24.24 |
| CDX95667 | Canola | mitochondrion, plastid | 27.08 | 23.88 |
| CDY15545 | Canola | mitochondrion | 23.51 | 23.72 |
| CDX99796 | Canola | mitochondrion | 27.38 | 23.17 |
| CDY28820 | Canola | cytosol | 25.6 | 23.06 |
| CDY65207 | Canola | mitochondrion | 22.02 | 22.98 |
| CDX95813 | Canola | mitochondrion | 21.13 | 22.54 |
| CDY71779 | Canola | mitochondrion | 22.62 | 21.59 |
| CDY28818 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 24.4 | 21.47 |
| CDY15546 | Canola | plastid | 24.7 | 21.23 |
| CDX95970 | Canola | mitochondrion | 23.21 | 21.08 |
| CDY02744 | Canola | mitochondrion | 14.29 | 20.6 |
| CDY33565 | Canola | plastid | 23.21 | 20.53 |
| CDX92018 | Canola | mitochondrion | 21.43 | 18.41 |
| CDY41583 | Canola | mitochondrion | 12.2 | 17.75 |
| CDX92019 | Canola | mitochondrion | 19.64 | 16.54 |
| CDX86572 | Canola | mitochondrion | 8.63 | 16.38 |
| CDY10122 | Canola | mitochondrion | 31.25 | 14.48 |
Protein Annotations
| EnsemblPlants:CDY53420 | EnsemblPlantsGene:GSBRNA2T00010653001 | InterPro:DUF295 | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF3 | PFAM:PF03478 |
| ProteinID:CDY53420 | ProteinID:CDY53420.1 | SEG:seg | UniParc:UPI0004EB349C | UniProt:A0A078IQQ6 | MapMan:35.2 |
Description
BnaC02g47140DBnaC02g47140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQQ6]
Coordinates
chrLK033198:-:69737..71274
Molecular Weight (calculated)
38856.1 Da
IEP (calculated)
6.522
GRAVY (calculated)
-0.458
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLDYMLKLA SSGKDSSDGR ISIGKNSRSE QKHIVIKDLA LVNEVRNAMT LRYNDFKVGI SGDRTSDVRL LLPFQPTRSN SLNVLPPPLP TGSVIQNIAM
101: TSYLDLEDED WVLAVKLYGS KIKLFRRSYK PTWIDVNYMP PSIYTTSSLM YSKKDERLYV PTPGGDYLYS LDSKSTEDDR PEFIGLWTED LTKYLNENQL
201: EVNTFTKTVH FLEPPSGEQF FVKWFFYDEY EIYKGSKKQV TSRTVDFIVF RADDHPIEKK KKQLFYTDDI GDLCIFLGHG EPYCVRASSH PGLRANCIYF
301: SGYNFGTYDI NTKRCNMFFA EEDILSSTKF PYWPHP
101: TSYLDLEDED WVLAVKLYGS KIKLFRRSYK PTWIDVNYMP PSIYTTSSLM YSKKDERLYV PTPGGDYLYS LDSKSTEDDR PEFIGLWTED LTKYLNENQL
201: EVNTFTKTVH FLEPPSGEQF FVKWFFYDEY EIYKGSKKQV TSRTVDFIVF RADDHPIEKK KKQLFYTDDI GDLCIFLGHG EPYCVRASSH PGLRANCIYF
301: SGYNFGTYDI NTKRCNMFFA EEDILSSTKF PYWPHP
001: MSQPLIRILN PLVYTNVLRK NNLVRWCSST PIYPFLLIDH LLKIGGSSNG SSSISRRSGS EGENEIIIKS KFLAGEVCEA MSMGLNQSGV NIHMKENTSL
101: RDMDNVRLNI YYKPSDPKSK SVSVHLPPLP KGSQIQNIAM TSLPDLKNDD WVVAIKFSVS QLMLYRHKDL RWINIETTHG HECICPYSSL KYSKKEQRFY
201: TSTPGGDWMC SFGLNFKEKD EPTYHIIDKK DLPQYMLYEL EEMNSFTRTD HLVESPSGEQ FLISWYYGDA FESDTVVHKT KRFLVFKEKE NAKRHKDMYY
301: TENIGDLCIF LGHGEPMCVP ASSSPGLKPN CIYFAGHNFG VYDITTQTIT LFYTEEGPLR STAFPYWPHP FSLTPT
101: RDMDNVRLNI YYKPSDPKSK SVSVHLPPLP KGSQIQNIAM TSLPDLKNDD WVVAIKFSVS QLMLYRHKDL RWINIETTHG HECICPYSSL KYSKKEQRFY
201: TSTPGGDWMC SFGLNFKEKD EPTYHIIDKK DLPQYMLYEL EEMNSFTRTD HLVESPSGEQ FLISWYYGDA FESDTVVHKT KRFLVFKEKE NAKRHKDMYY
301: TENIGDLCIF LGHGEPMCVP ASSSPGLKPN CIYFAGHNFG VYDITTQTIT LFYTEEGPLR STAFPYWPHP FSLTPT
Arabidopsis Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q9FNK9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.