Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95813 | Canola | mitochondrion | 97.73 | 54.6 |
| CDY65207 | Canola | mitochondrion | 85.8 | 46.89 |
| CDY23447 | Canola | mitochondrion | 46.02 | 41.33 |
| CDX86571 | Canola | cytosol | 16.48 | 33.72 |
| CDY65427 | Canola | cytosol | 31.25 | 28.5 |
| AT5G03390.1 | Thale cress | mitochondrion | 52.84 | 24.93 |
| CDX99886 | Canola | cytosol | 27.27 | 22.02 |
| CDY59993 | Canola | cytosol, plastid | 34.09 | 21.98 |
| CDY71779 | Canola | mitochondrion | 41.48 | 20.74 |
| CDX95970 | Canola | mitochondrion | 38.64 | 18.38 |
| CDY33565 | Canola | plastid | 39.2 | 18.16 |
| CDY50787 | Canola | cytosol | 30.68 | 16.67 |
| CDY57750 | Canola | plastid | 35.23 | 16.62 |
| CDX83387 | Canola | cytosol | 32.95 | 16.02 |
| CDY47276 | Canola | mitochondrion | 32.95 | 15.76 |
| CDY10119 | Canola | mitochondrion | 32.95 | 15.76 |
| CDX83388 | Canola | plastid | 34.09 | 15.67 |
| CDX90231 | Canola | mitochondrion | 32.39 | 15.57 |
| CDY10120 | Canola | mitochondrion | 29.55 | 15.38 |
| CDY47275 | Canola | cytosol | 33.52 | 15.36 |
| CDY57749 | Canola | mitochondrion | 30.68 | 15.34 |
| CDY51469 | Canola | mitochondrion | 31.82 | 15.3 |
| CDX95667 | Canola | mitochondrion, plastid | 32.95 | 15.22 |
| CDX90232 | Canola | mitochondrion | 30.68 | 15.17 |
| CDX98187 | Canola | mitochondrion | 31.25 | 15.07 |
| CDY28820 | Canola | cytosol | 31.82 | 15.01 |
| CDY51468 | Canola | mitochondrion | 30.68 | 15.0 |
| CDX99797 | Canola | plastid | 31.82 | 14.97 |
| CDY15546 | Canola | plastid | 32.95 | 14.83 |
| CDX95668 | Canola | mitochondrion | 31.82 | 14.66 |
| CDX94769 | Canola | cytosol | 30.68 | 14.48 |
| CDX92018 | Canola | mitochondrion | 31.82 | 14.32 |
| CDX92019 | Canola | mitochondrion | 32.39 | 14.29 |
| CDY35144 | Canola | mitochondrion | 25.57 | 14.24 |
| CDY02744 | Canola | mitochondrion | 18.75 | 14.16 |
| CDX90173 | Canola | mitochondrion | 29.55 | 13.98 |
| CDY48999 | Canola | cytosol | 30.68 | 13.92 |
| CDY43323 | Canola | mitochondrion | 28.98 | 13.71 |
| CDX99887 | Canola | extracellular, plasma membrane | 27.27 | 13.52 |
| CDX86573 | Canola | mitochondrion | 27.84 | 13.5 |
| CDX99796 | Canola | mitochondrion | 30.11 | 13.35 |
| CDY53420 | Canola | cytosol | 25.0 | 13.1 |
| CDY15545 | Canola | mitochondrion | 24.43 | 12.91 |
| CDY28818 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 27.27 | 12.57 |
| CDY41583 | Canola | mitochondrion | 15.91 | 12.12 |
| CDY03244 | Canola | cytosol | 16.48 | 11.37 |
| CDY10122 | Canola | mitochondrion | 31.82 | 7.72 |
| CDX86572 | Canola | mitochondrion | 0.57 | 0.56 |
Protein Annotations
| EnsemblPlants:CDY27327 | EnsemblPlantsGene:GSBRNA2T00037264001 | InterPro:DUF295 | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF3 | PFAM:PF03478 |
| ProteinID:CDY27327 | ProteinID:CDY27327.1 | UniParc:UPI0004EECF07 | UniProt:A0A078GQ46 | MapMan:35.2 | : |
Description
BnaC04g50780DBnaC04g50780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQ46]
Coordinates
chrLK032203:-:108054..108829
Molecular Weight (calculated)
20035.7 Da
IEP (calculated)
5.617
GRAVY (calculated)
-0.290
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDQKFYLHS PDTAPTDLIK TCSDFPPVSP YRRFPFSDIP KTTQDLYQSS IFRTQYLVES PSGDSFIVIW CMAGGKMEKE TSRLMCDTKG FMVFKQDHGK
101: KLCSYTQDIG DLCIFLGKNE SFCVSATKYP GLNPNSVYFE GSETGFGFYE LSSNTVHDLT HLAPFSTFYL WLAPLE
101: KLCSYTQDIG DLCIFLGKNE SFCVSATKYP GLNPNSVYFE GSETGFGFYE LSSNTVHDLT HLAPFSTFYL WLAPLE
001: MSQLLGRTAK ISSVVKKQRL CFSELRSFST AATPYLLLKD TNYRAASGGS VVDINLYDPR KKEIVKIRDQ YLSEELQCTM KMGSSRGWIV AKTIYEPTLY
101: LTNIFNPCAS VSSHKVFNLP PLEDDAKARI SSISLSASPN QQDCVLAVKS SSSPFLSLWR PGDSAWTRIK VPFPASNVMM YSGRDRKFYL LPRESKEECE
201: GPIDLINTSS DDFPQVTLYQ RFPNSDIPVS RQEQLLSSIK TRYLVESPSG DSFIVYWCNE RSFYWKKGEV KPWTGKNPPP SRISCRLKTR TFVVFRQDSE
301: QGIGSYTEDI GDLCIFLGHR EAFCVSATEY PGLRPNSVYY ATSGTGFGYY DLSSNTLHDV IHEGLFSWIA PLQ
101: LTNIFNPCAS VSSHKVFNLP PLEDDAKARI SSISLSASPN QQDCVLAVKS SSSPFLSLWR PGDSAWTRIK VPFPASNVMM YSGRDRKFYL LPRESKEECE
201: GPIDLINTSS DDFPQVTLYQ RFPNSDIPVS RQEQLLSSIK TRYLVESPSG DSFIVYWCNE RSFYWKKGEV KPWTGKNPPP SRISCRLKTR TFVVFRQDSE
301: QGIGSYTEDI GDLCIFLGHR EAFCVSATEY PGLRPNSVYY ATSGTGFGYY DLSSNTLHDV IHEGLFSWIA PLQ
Arabidopsis Description
At5g03390 [Source:UniProtKB/TrEMBL;Acc:Q9LZF0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.