CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
peroxisome 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010846.1-P	Field mustard	mitochondrion	97.04	97.04
CDY43323	Canola	mitochondrion	95.97	95.97
CDY57750	Canola	plastid	61.29	61.13
CDX86571	Canola	cytosol	13.71	59.3
CDY10120	Canola	mitochondrion	48.12	52.96
CDX86573	Canola	mitochondrion	49.73	50.96
CDY47275	Canola	cytosol	51.88	50.26
CDY57749	Canola	mitochondrion	46.77	49.43
CDY15545	Canola	mitochondrion	44.09	49.25
CDX90231	Canola	mitochondrion	47.58	48.36
CDY51469	Canola	mitochondrion	47.04	47.81
CDY50787	Canola	cytosol	40.86	46.91
CDX98187	Canola	mitochondrion	45.97	46.85
CDX99797	Canola	plastid	45.97	45.72
CDY10119	Canola	mitochondrion	45.16	45.65
CDY47276	Canola	mitochondrion	45.16	45.65
CDX99886	Canola	cytosol	26.61	45.41
CDX99796	Canola	mitochondrion	48.39	45.34
CDX86572	Canola	mitochondrion	20.97	44.07
CDX90232	Canola	mitochondrion	41.4	43.26
CDY51468	Canola	mitochondrion	40.86	42.22
CDX99887	Canola	extracellular, plasma membrane	39.52	41.41
CDX95667	Canola	mitochondrion, plastid	41.67	40.68
CDY15546	Canola	plastid	42.2	40.15
CDX83388	Canola	plastid	41.13	39.95
CDY59993	Canola	cytosol, plastid	27.69	37.73
CDX83387	Canola	cytosol	36.56	37.57
CDX95668	Canola	mitochondrion	38.17	37.17
CDY65427	Canola	cytosol	18.55	35.75
CDY02744	Canola	mitochondrion	21.24	33.91
CDY23447	Canola	mitochondrion	17.47	33.16
CDX95813	Canola	mitochondrion	27.15	32.06
CDX94769	Canola	cytosol	31.45	31.37
CDX95970	Canola	mitochondrion	30.91	31.08
CDY65207	Canola	mitochondrion	26.88	31.06
CDY48999	Canola	cytosol	31.72	30.41
CDY71779	Canola	mitochondrion	28.23	29.83
CDY27327	Canola	cytosol	13.98	29.55
CDY33565	Canola	plastid	30.11	29.47
CDY53420	Canola	cytosol	26.61	29.46
CDY03244	Canola	cytosol	20.16	29.41
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	30.11	29.32
CDY28820	Canola	cytosol	28.49	28.42
CDY41583	Canola	mitochondrion	17.47	28.14
CDX92018	Canola	mitochondrion	27.96	26.6
CDY35144	Canola	mitochondrion	22.04	25.95
CDX92019	Canola	mitochondrion	27.15	25.31
CDY10122	Canola	mitochondrion	48.66	24.97

Protein Annotations

EnsemblPlants:CDX90173	EnsemblPlantsGene:GSBRNA2T00150720001	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3	PFAM:PF03478
ProteinID:CDX90173	ProteinID:CDX90173.1	UniParc:UPI0004EDDC23	MapMan:35.2	:	:

Description

BnaA08g18110D

Coordinates

chrLK031862:+:475779..477203

Molecular Weight (calculated)

42558.9 Da

IEP (calculated)

8.219

GRAVY (calculated)

-0.323

Length

372 amino acids

Sequence
(BLAST)

001: MSRRFIKLSP WSHALIHKRR FRLFSSSFTT PYLLLGTTLK NALPDGSDVR DVLLFDPTKE EMLTVPNITF PEELAGSRQI GSARGWGIFS NDHDRSLCIS
101: DLYSSLGPKS TLTMIPMPSL VAVHSNQTNA VWNVAMSSSP SDQDCVVAIK LLDRQLSLCR PHSDMRWTNV GEMLAENNLQ KLENSTLMYS KRERKFYLPG
201: PGGNSLYSWD LHLKKNKVPN FHELMFRDLP ELDDSEWKLL GWCCRTEHLV ELASSGERFL VKWYAQRFFS SSHEGSNYTT RRFMVFREKK LTEGRYMHYT
301: EDIGDVCIFI SMSEAFCVVA SSCPGLKPNS IYFIGHGFGI YNVADTRIHH FQAPEGAPTS FKDPYWLPPS RI

Best Arabidopsis Sequence Match ( AT1G30170.1 )
(BLAST)

001: MSRLLSKLSP LIHKRSVRSF SSSTTGPYLQ LSLSAKPSSE GVVNIGEIVL YDPAKQELLN LTDKPIPEEI VTAKWIGASK GWAFFLDTQD RCVLITDSLN
101: PWACKSNPKL LTLPPLNPLF SCQTDVIWNV AMSSCPDDDE DWVVGIKSLG DQVSFCRPRR DLRWTKFQTP SDHFPTSNLT YSKRDRKFYL PGPGGHHLLS
201: YDLDFNKADQ PEFHELQFRN FPESLKYDSE LSELFPSSCR TERFVESPSG DERFLVKWYA KGCLASSSKI TYETQRFMVF REEETTEERF MCYTDDIGDL
301: CIFVSKSEAF CVPASSYPGL KPNSIYFVGF GLGIYDLTTR NVSIFRAPKG ALNQIVSPYW FPPASS

Arabidopsis Description

Uncharacterized protein T2H7.3 [Source:UniProtKB/TrEMBL;Acc:Q9C6Z8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.