Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- mitochondrion 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030615.1-P | Field mustard | mitochondrion | 84.4 | 91.16 |
| AT1G05540.1 | Thale cress | mitochondrion | 57.54 | 61.31 |
| CDY47276 | Canola | mitochondrion | 52.43 | 55.71 |
| CDY10119 | Canola | mitochondrion | 51.92 | 55.16 |
| CDX99886 | Canola | cytosol | 29.41 | 52.75 |
| CDY50787 | Canola | cytosol | 41.94 | 50.62 |
| CDX99797 | Canola | plastid | 46.29 | 48.4 |
| CDY10120 | Canola | mitochondrion | 40.66 | 47.04 |
| CDY57749 | Canola | mitochondrion | 41.43 | 46.02 |
| CDX90232 | Canola | mitochondrion | 41.18 | 45.22 |
| CDY57750 | Canola | plastid | 42.46 | 44.5 |
| CDX86571 | Canola | cytosol | 9.72 | 44.19 |
| CDX86572 | Canola | mitochondrion | 19.95 | 44.07 |
| CDX98187 | Canola | mitochondrion | 40.92 | 43.84 |
| CDY47275 | Canola | cytosol | 42.97 | 43.75 |
| CDY51468 | Canola | mitochondrion | 39.9 | 43.33 |
| CDX86573 | Canola | mitochondrion | 39.64 | 42.7 |
| CDY51469 | Canola | mitochondrion | 39.9 | 42.62 |
| CDX90231 | Canola | mitochondrion | 39.64 | 42.35 |
| CDX90173 | Canola | mitochondrion | 40.15 | 42.2 |
| CDX99796 | Canola | mitochondrion | 42.71 | 42.07 |
| CDY43323 | Canola | mitochondrion | 39.64 | 41.67 |
| CDY15545 | Canola | mitochondrion | 35.04 | 41.14 |
| CDX83388 | Canola | plastid | 38.11 | 38.9 |
| CDX99887 | Canola | extracellular, plasma membrane | 35.04 | 38.59 |
| CDY59993 | Canola | cytosol, plastid | 26.85 | 38.46 |
| CDX95667 | Canola | mitochondrion, plastid | 37.34 | 38.32 |
| CDY65427 | Canola | cytosol | 18.16 | 36.79 |
| CDY23447 | Canola | mitochondrion | 17.14 | 34.18 |
| CDY27327 | Canola | cytosol | 14.83 | 32.95 |
| CDX95813 | Canola | mitochondrion | 26.34 | 32.7 |
| CDX83387 | Canola | cytosol | 29.67 | 32.04 |
| CDY65207 | Canola | mitochondrion | 25.83 | 31.37 |
| CDX95668 | Canola | mitochondrion | 30.43 | 31.15 |
| CDY02744 | Canola | mitochondrion | 18.41 | 30.9 |
| CDY10122 | Canola | mitochondrion | 52.94 | 28.55 |
| CDY71779 | Canola | mitochondrion | 25.58 | 28.41 |
| CDX94769 | Canola | cytosol | 26.85 | 28.15 |
| CDY48999 | Canola | cytosol | 27.88 | 28.09 |
| CDY03244 | Canola | cytosol | 17.9 | 27.45 |
| CDY28820 | Canola | cytosol | 25.58 | 26.81 |
| CDX95970 | Canola | mitochondrion | 25.06 | 26.49 |
| CDY33565 | Canola | plastid | 25.58 | 26.32 |
| CDY28818 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 25.58 | 26.18 |
| CDX92018 | Canola | mitochondrion | 26.09 | 26.09 |
| CDY53420 | Canola | cytosol | 21.23 | 24.7 |
| CDY41583 | Canola | mitochondrion | 14.32 | 24.24 |
| CDX92019 | Canola | mitochondrion | 24.04 | 23.56 |
| CDY35144 | Canola | mitochondrion | 16.88 | 20.89 |
Protein Annotations
| EnsemblPlants:CDY15546 | EnsemblPlantsGene:GSBRNA2T00089721001 | InterPro:DUF295 | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF3 | PFAM:PF03478 |
| ProteinID:CDY15546 | ProteinID:CDY15546.1 | UniParc:UPI0004EE52B4 | UniProt:A0A078FR06 | MapMan:35.2 | : |
Description
BnaA08g28300DBnaA08g28300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR06]
Coordinates
chrLK032055:-:473528..475015
Molecular Weight (calculated)
44137.0 Da
IEP (calculated)
6.880
GRAVY (calculated)
-0.093
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MYYSFYSVNS SKHYFYIILK FIEQCHSFSS VSPNSLTGIR MFLGTQLSLS LVIASRIKFR AQKSVRLFST SPCLSLCCVW DDALGLVEGG SYIGKVLFFD
101: PAKNEILQVP DKTIPQELLN SKPIGASQGW GFSSEQSNHN SLHITDLFNP LAASNMLYGQ TKVVWNVAMS SSSPHEEDCV VAIKFFGRQL SMCKPGRDLA
201: WTNRLIPFDR AENSNLMYSK RDQRFYLPAP GGNYLCSWDL HFDNDPKFNE LVFPNFPNLP QSTWEDLDSC IREDHWVESP SGQSFLVKRY SRVGSKAPMV
301: MVLVFREEDQ VTAKGTRNMC YTQDIGDLCI FLSKNDPFCV VASSCPGLKP NSIYMMDHCV SICELANGTV TCFELPKMMP FSPLWIPPCS V
101: PAKNEILQVP DKTIPQELLN SKPIGASQGW GFSSEQSNHN SLHITDLFNP LAASNMLYGQ TKVVWNVAMS SSSPHEEDCV VAIKFFGRQL SMCKPGRDLA
201: WTNRLIPFDR AENSNLMYSK RDQRFYLPAP GGNYLCSWDL HFDNDPKFNE LVFPNFPNLP QSTWEDLDSC IREDHWVESP SGQSFLVKRY SRVGSKAPMV
301: MVLVFREEDQ VTAKGTRNMC YTQDIGDLCI FLSKNDPFCV VASSCPGLKP NSIYMMDHCV SICELANGTV TCFELPKMMP FSPLWIPPCS V
001: MSQLLFRLSK LSSRNNELIH KSVRLFSTSP YLTLGSVVED LPEEDGSYIG DILLFDPAKE ELVTVRDKTI PEKLVNSRVV GASHGWTFFS DRCNHNSVCI
101: SDLFTPMASK SNTKIIPLPL LTTMIYGQTE AVWNVAMSSS SPHQDNEEED CVVAINFLGS QLSVCRPGRD HGWTNKQIPF ICSENSNLMY SKRDQRFYLP
201: APGGNYLCSW DLHFDNDPKF NELVFLNLPE LPQSEWELLN SCFKEDHWVE SPSGQSFLVK WYSHIPSQRY KDPILMVLRE DEETEEGTRN MCYTEDIGDL
301: CIFLSKSDPF CVVASSCPGL KPNSIYLMGR CFAVYDLTTR TARHFKAPKG GPERVPFLPY WLPPFSI
101: SDLFTPMASK SNTKIIPLPL LTTMIYGQTE AVWNVAMSSS SPHQDNEEED CVVAINFLGS QLSVCRPGRD HGWTNKQIPF ICSENSNLMY SKRDQRFYLP
201: APGGNYLCSW DLHFDNDPKF NELVFLNLPE LPQSEWELLN SCFKEDHWVE SPSGQSFLVK WYSHIPSQRY KDPILMVLRE DEETEEGTRN MCYTEDIGDL
301: CIFLSKSDPF CVVASSCPGL KPNSIYLMGR CFAVYDLTTR TARHFKAPKG GPERVPFLPY WLPPFSI
Arabidopsis Description
T25N20.19 [Source:UniProtKB/TrEMBL;Acc:Q9ZVY4]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.