CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030614.1-P	Field mustard	mitochondrion	96.7	91.22
CDX86571	Canola	cytosol	21.92	84.88
CDX86572	Canola	mitochondrion	43.84	82.49
CDX86573	Canola	mitochondrion	89.49	82.09
AT1G05550.3	Thale cress	cytosol	66.07	57.14
CDY10120	Canola	mitochondrion	57.96	57.1
CDY47275	Canola	cytosol	64.56	55.99
CDY57750	Canola	plastid	51.05	45.58
CDX90231	Canola	mitochondrion	48.95	44.54
CDY51469	Canola	mitochondrion	48.65	44.26
CDY50787	Canola	cytosol	42.94	44.14
CDX90173	Canola	mitochondrion	49.25	44.09
CDY43323	Canola	mitochondrion	48.95	43.82
CDY10119	Canola	mitochondrion	48.35	43.75
CDY47276	Canola	mitochondrion	47.45	42.93
CDY57749	Canola	mitochondrion	44.74	42.33
CDX99796	Canola	mitochondrion	50.15	42.07
CDX99797	Canola	plastid	46.55	41.44
CDX98187	Canola	mitochondrion	43.84	40.0
CDX99887	Canola	extracellular, plasma membrane	41.74	39.15
CDX90232	Canola	mitochondrion	39.94	37.36
CDY51468	Canola	mitochondrion	39.94	36.94
CDX99886	Canola	cytosol	23.42	35.78
CDY15546	Canola	plastid	41.14	35.04
CDX83387	Canola	cytosol	37.84	34.81
CDX83388	Canola	plastid	39.04	33.94
CDX95667	Canola	mitochondrion, plastid	38.74	33.86
CDX95668	Canola	mitochondrion	38.44	33.51
CDY59993	Canola	cytosol, plastid	27.03	32.97
CDY23447	Canola	mitochondrion	18.32	31.12
CDY02744	Canola	mitochondrion	21.62	30.9
CDY65427	Canola	cytosol	17.42	30.05
CDY71779	Canola	mitochondrion	30.63	28.98
CDX95813	Canola	mitochondrion	27.33	28.89
CDY41583	Canola	mitochondrion	19.22	27.71
CDY65207	Canola	mitochondrion	26.73	27.64
CDY28820	Canola	cytosol	30.93	27.61
CDX94769	Canola	cytosol	30.63	27.35
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	30.93	26.96
CDY33565	Canola	plastid	30.63	26.84
CDX95970	Canola	mitochondrion	29.73	26.76
CDY48999	Canola	cytosol	30.03	25.77
CDY10122	Canola	mitochondrion	55.56	25.52
CDX92018	Canola	mitochondrion	28.83	24.55
CDY27327	Canola	cytosol	12.91	24.43
CDY53420	Canola	cytosol	23.72	23.51
CDX92019	Canola	mitochondrion	27.33	22.81
CDY35144	Canola	mitochondrion	21.02	22.15
CDY03244	Canola	cytosol	16.52	21.57

Protein Annotations

EnsemblPlants:CDY15545	EnsemblPlantsGene:GSBRNA2T00089720001	InterPro:DUF295	ncoils:Coil	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3
PFAM:PF03478	ProteinID:CDY15545	ProteinID:CDY15545.1	SEG:seg	UniParc:UPI0004EF005C	UniProt:A0A078FMB3
MapMan:35.2	:	:	:	:	:

Description

BnaA08g28290DBnaA08g28290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMB3]

Coordinates

chrLK032055:+:469846..472995

Molecular Weight (calculated)

37731.9 Da

IEP (calculated)

5.996

GRAVY (calculated)

-0.307

Length

333 amino acids

Sequence
(BLAST)

001: MSRRIIRLSK LSSRNNNAFI QKCVRFFSTG PYLTLGCNTG DVLLFDPAKE QIIVTLQGKT IPKELKDEEM IGASHGWGFF YDRRDLSVRM SDIFNPLASK
101: SNPTVIPLPR LTDLPSEQIE QVCNVAMSSP SPLGDEDCVV AIKFSGDQLS LCRPGRDLEW TNTSTPSHCC IHFFSYHLND ENIEHHKLVY RDHPELDQSE
201: WKTLSMCSRR EYLVESPSSD ERYLVKWYAQ GSYSSVLNGI DYKTKRFMVF REEETAEGKF MCYTEDIGEM CIFIASNETF CIPASSCPGL KPSTIYFMGH
301: GFGSYDLTTG DTHHYKAPGG VITTPCWIPL VSI

Best Arabidopsis Sequence Match ( AT1G05550.3 )
(BLAST)

001: MAEVEPAAPS QPKNRKLATV LSIMLCNKLC RLTLFDRKCV LAFKMRWSMK RRLASTLTNL IGIQKSIRLF STSPYLTLGT RVKKILPAGC KIGDVLLFDP
101: TKEEIVTVPD KTIPEELMDE EMMGASHGWG FFCDRTDRSV RISDIFNPLA SKTNPVMIPL PRLTALPTGQ TEKVFNVAMS SSSPLGEEDC VVAIKFSGIQ
201: LSLCRPGCDL EWTNIVTPFN CLDTTQVSYD SPGLHELFYR DHPVLDQSEW ELLSSCSRTE YLVESPSGGD RFLVKWYALG FFSSNLKGIY HKTKGLMVFR
301: EEETTEGKIM CYTEDIGDMC IFLASNEAFC IPASSCLGLK PNCVYYMGRG FGFYDLTTGE AHHYKAPKGA PSALTAPYWL PPFAI

Arabidopsis Description

Protein of unknown function (DUF295) [Source:TAIR;Acc:AT1G05550]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.