CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57749	Canola	mitochondrion	79.73	82.67
CDY10119	Canola	mitochondrion	49.32	48.91
CDY47276	Canola	mitochondrion	49.04	48.64
CDY57750	Canola	plastid	49.59	48.53
CDY10120	Canola	mitochondrion	44.66	48.22
CDY50787	Canola	cytosol	42.47	47.84
CDX86572	Canola	mitochondrion	23.01	47.46
CDX86571	Canola	cytosol	10.96	46.51
CDX90232	Canola	mitochondrion	45.21	46.35
CDX90173	Canola	mitochondrion	46.85	45.97
CDX99886	Canola	cytosol	27.4	45.87
CDX99797	Canola	plastid	46.85	45.72
CDY43323	Canola	mitochondrion	46.58	45.7
CDY51468	Canola	mitochondrion	44.93	45.56
CDX86573	Canola	mitochondrion	44.66	44.9
CDX90231	Canola	mitochondrion	44.93	44.81
CDY51469	Canola	mitochondrion	44.66	44.54
CDY15545	Canola	mitochondrion	40.0	43.84
CDY47275	Canola	cytosol	45.48	43.23
CDX99887	Canola	extracellular, plasma membrane	40.27	41.41
CDX95667	Canola	mitochondrion, plastid	42.74	40.94
CDY15546	Canola	plastid	43.84	40.92
CDX99796	Canola	mitochondrion	43.84	40.3
CDX83388	Canola	plastid	41.37	39.43
CDY59993	Canola	cytosol, plastid	27.95	37.36
CDX83387	Canola	cytosol	35.62	35.91
CDX95668	Canola	mitochondrion	37.53	35.86
CDY65427	Canola	cytosol	18.08	34.2
CDX95813	Canola	mitochondrion	27.4	31.75
CDY27327	Canola	cytosol	15.07	31.25
CDY48999	Canola	cytosol	33.15	31.19
CDY28820	Canola	cytosol	31.51	30.83
CDY65207	Canola	mitochondrion	27.12	30.75
CDY23447	Canola	mitochondrion	16.44	30.61
CDX94769	Canola	cytosol	31.23	30.56
CDY71779	Canola	mitochondrion	27.95	28.98
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	30.14	28.8
CDY02744	Canola	mitochondrion	18.36	28.76
CDY41583	Canola	mitochondrion	17.53	27.71
CDY53420	Canola	cytosol	24.66	26.79
CDY03244	Canola	cytosol	18.63	26.67
CDX92018	Canola	mitochondrion	28.22	26.34
CDY33565	Canola	plastid	27.12	26.05
CDY10122	Canola	mitochondrion	49.32	24.83
CDX95970	Canola	mitochondrion	24.93	24.59
CDX92019	Canola	mitochondrion	26.85	24.56
CDY35144	Canola	mitochondrion	19.18	22.15

Protein Annotations

EnsemblPlants:CDX98187	EnsemblPlantsGene:GSBRNA2T00105634001	InterPro:DUF295	ncoils:Coil	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3
PFAM:PF03478	ProteinID:CDX98187	ProteinID:CDX98187.1	SEG:seg	UniParc:UPI0004EEA0B1	MapMan:35.2

Description

BnaC07g09110D

Coordinates

chrLK031903:-:514160..515696

Molecular Weight (calculated)

41102.9 Da

IEP (calculated)

5.108

GRAVY (calculated)

-0.203

Length

365 amino acids

Sequence
(BLAST)

001: MSRFLNNGLS FLMHKRGSRM LSSSSSSSGP FLRLGSMVKE EEEEDVLDDV LLFDAAKEEL LTVPDKPHPH ELADTTVVAS SLGWGFFSGF SDRSLYISDH
101: LNPLSSSSKV IPLPPLTALS SCQTDVFCNV AMSSSSPSDD DPDLVVAVKF LGRQLSLCRP NRDLRWTNIA TPFPFLERSN LMYSNRDRKF YLPLPGSTYL
201: CSWDLHFTPS FRKFMYTNRP KLSQSEHQLL DSCSRADYWV ESPSGERFLV KCYTNDTLER DPVFMVFREE GMTDMCYTED IGDLCIFISE SDPFCVLAGS
301: CPGLVPNSIY LTESVFGVYH LPTKSLRHFE EKPFLGKAEV QPSLGKAEVQ PILPHWLPPS CSHLL

Best Arabidopsis Sequence Match ( AT1G05540.1 )
(BLAST)

001: MSQLLFRLSK LSSRNNELIH KSVRLFSTSP YLTLGSVVED LPEEDGSYIG DILLFDPAKE ELVTVRDKTI PEKLVNSRVV GASHGWTFFS DRCNHNSVCI
101: SDLFTPMASK SNTKIIPLPL LTTMIYGQTE AVWNVAMSSS SPHQDNEEED CVVAINFLGS QLSVCRPGRD HGWTNKQIPF ICSENSNLMY SKRDQRFYLP
201: APGGNYLCSW DLHFDNDPKF NELVFLNLPE LPQSEWELLN SCFKEDHWVE SPSGQSFLVK WYSHIPSQRY KDPILMVLRE DEETEEGTRN MCYTEDIGDL
301: CIFLSKSDPF CVVASSCPGL KPNSIYLMGR CFAVYDLTTR TARHFKAPKG GPERVPFLPY WLPPFSI

Arabidopsis Description

T25N20.19 [Source:UniProtKB/TrEMBL;Acc:Q9ZVY4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.