CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015433.1-P	Field mustard	mitochondrion	99.73	99.73
CDY10119	Canola	mitochondrion	92.12	92.12
AT1G05540.1	Thale cress	mitochondrion	72.55	72.75
CDY10120	Canola	mitochondrion	51.63	56.21
CDX86572	Canola	mitochondrion	26.9	55.93
CDX86571	Canola	cytosol	12.77	54.65
CDX99886	Canola	cytosol	31.79	53.67
CDY50787	Canola	cytosol	46.74	53.09
CDY15546	Canola	plastid	55.71	52.43
CDY57749	Canola	mitochondrion	48.91	51.14
CDX99797	Canola	plastid	51.9	51.07
CDY47275	Canola	cytosol	52.72	50.52
CDX86573	Canola	mitochondrion	49.46	50.14
CDX98187	Canola	mitochondrion	48.64	49.04
CDX90232	Canola	mitochondrion	47.01	48.6
CDY57750	Canola	plastid	48.1	47.45
CDY15545	Canola	mitochondrion	42.93	47.45
CDY51468	Canola	mitochondrion	45.92	46.94
CDY43323	Canola	mitochondrion	46.47	45.97
CDX90173	Canola	mitochondrion	45.65	45.16
CDY51469	Canola	mitochondrion	44.02	44.26
CDX90231	Canola	mitochondrion	44.02	44.26
CDX99796	Canola	mitochondrion	46.74	43.32
CDX95667	Canola	mitochondrion, plastid	44.57	43.04
CDX83388	Canola	plastid	43.21	41.51
CDY65427	Canola	cytosol	21.2	40.41
CDX99887	Canola	extracellular, plasma membrane	38.86	40.28
CDY59993	Canola	cytosol, plastid	29.35	39.56
CDX83387	Canola	cytosol	38.32	38.95
CDX95668	Canola	mitochondrion	39.67	38.22
CDY10122	Canola	mitochondrion	75.0	38.07
CDY02744	Canola	mitochondrion	22.55	35.62
CDY23447	Canola	mitochondrion	17.66	33.16
CDY27327	Canola	cytosol	15.76	32.95
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	33.97	32.72
CDY28820	Canola	cytosol	33.15	32.71
CDX95813	Canola	mitochondrion	27.72	32.38
CDX94769	Canola	cytosol	32.07	31.64
CDY71779	Canola	mitochondrion	30.16	31.53
CDY65207	Canola	mitochondrion	27.45	31.37
CDY48999	Canola	cytosol	32.61	30.93
CDX95970	Canola	mitochondrion	30.98	30.81
CDY33565	Canola	plastid	31.79	30.79
CDY41583	Canola	mitochondrion	19.02	30.3
CDY53420	Canola	cytosol	26.63	29.17
CDX92018	Canola	mitochondrion	29.62	27.88
CDY03244	Canola	cytosol	18.75	27.06
CDX92019	Canola	mitochondrion	27.99	25.81
CDY35144	Canola	mitochondrion	20.65	24.05

Protein Annotations

EnsemblPlants:CDY47276	EnsemblPlantsGene:GSBRNA2T00087084001	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3	PFAM:PF03478
ProteinID:CDY47276	ProteinID:CDY47276.1	UniParc:UPI0004EED889	UniProt:A0A078IBQ9	MapMan:35.2	:

Description

BnaA10g03700DBnaA10g03700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBQ9]

Coordinates

chrLK032705:-:77170..78889

Molecular Weight (calculated)

41710.8 Da

IEP (calculated)

6.179

GRAVY (calculated)

-0.202

Length

368 amino acids

Sequence
(BLAST)

001: MSQLLFRLSK LSSRNNNVLI HKKSSRFLST SPYLILGVFG DDFRSACGNF LSDILLFDPA KEELLTVRDK AVPEELVCSQ VMGASHGWGF FSGHNAIHVS
101: DTFSPLASKS DSKVIALPPI TSMIYGQSEV VWNVAMSSSS PYRQDNEEGD CVVAIKFLGN HLTMCRPGRD LGWTNKLIPF VSFENSNLMY SKREQRFSLP
201: APGGNYLCSW DLHFENEPKF TELVFRNIPQ LPQSEWELMD SCFKEDHWVE SPCGQSFLVK WYSHVPSIRC KEPMVMVFRE DQDTNEGTKT MSYTEDIGDL
301: CIFLSKSEPF CVVASSCPGL KPNSIYLMGH SFAVYDITTR TSRHFERPKG LPESLTTFLP YWLAPFSM

Best Arabidopsis Sequence Match ( AT1G05540.1 )
(BLAST)

001: MSQLLFRLSK LSSRNNELIH KSVRLFSTSP YLTLGSVVED LPEEDGSYIG DILLFDPAKE ELVTVRDKTI PEKLVNSRVV GASHGWTFFS DRCNHNSVCI
101: SDLFTPMASK SNTKIIPLPL LTTMIYGQTE AVWNVAMSSS SPHQDNEEED CVVAINFLGS QLSVCRPGRD HGWTNKQIPF ICSENSNLMY SKRDQRFYLP
201: APGGNYLCSW DLHFDNDPKF NELVFLNLPE LPQSEWELLN SCFKEDHWVE SPSGQSFLVK WYSHIPSQRY KDPILMVLRE DEETEEGTRN MCYTEDIGDL
301: CIFLSKSDPF CVVASSCPGL KPNSIYLMGR CFAVYDLTTR TARHFKAPKG GPERVPFLPY WLPPFSI

Arabidopsis Description

T25N20.19 [Source:UniProtKB/TrEMBL;Acc:Q9ZVY4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.