Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48999 | Canola | cytosol | 84.72 | 81.44 |
| CDY65427 | Canola | cytosol | 27.35 | 52.85 |
| CDX86571 | Canola | cytosol | 10.99 | 47.67 |
| CDX99886 | Canola | cytosol | 23.59 | 40.37 |
| CDY53420 | Canola | cytosol | 34.58 | 38.39 |
| CDY03244 | Canola | cytosol | 24.4 | 35.69 |
| CDX90231 | Canola | mitochondrion | 34.05 | 34.7 |
| CDY51469 | Canola | mitochondrion | 33.51 | 34.15 |
| CDY50787 | Canola | cytosol | 28.69 | 33.02 |
| CDY57749 | Canola | mitochondrion | 31.1 | 32.95 |
| CDX83387 | Canola | cytosol | 31.64 | 32.6 |
| CDY10120 | Canola | mitochondrion | 29.49 | 32.54 |
| CDY57750 | Canola | plastid | 32.44 | 32.44 |
| CDY10119 | Canola | mitochondrion | 31.9 | 32.34 |
| CDY43323 | Canola | mitochondrion | 32.17 | 32.26 |
| CDY47276 | Canola | mitochondrion | 31.64 | 32.07 |
| CDY59993 | Canola | cytosol, plastid | 23.06 | 31.5 |
| CDX90173 | Canola | mitochondrion | 31.37 | 31.45 |
| CDX95668 | Canola | mitochondrion | 32.17 | 31.41 |
| CDY47275 | Canola | cytosol | 32.17 | 31.25 |
| CDX95667 | Canola | mitochondrion, plastid | 31.9 | 31.23 |
| CDX98187 | Canola | mitochondrion | 30.56 | 31.23 |
| CDX90232 | Canola | mitochondrion | 29.76 | 31.18 |
| CDY51468 | Canola | mitochondrion | 30.03 | 31.11 |
| CDX99797 | Canola | plastid | 30.83 | 30.75 |
| CDY27327 | Canola | cytosol | 14.48 | 30.68 |
| CDY15545 | Canola | mitochondrion | 27.35 | 30.63 |
| CDX99796 | Canola | mitochondrion | 32.44 | 30.48 |
| CDX83388 | Canola | plastid | 31.1 | 30.29 |
| CDX86573 | Canola | mitochondrion | 29.22 | 30.03 |
| CDX99887 | Canola | extracellular, plasma membrane | 27.61 | 29.01 |
| CDY28820 | Canola | cytosol | 27.08 | 27.08 |
| CDY15546 | Canola | plastid | 28.15 | 26.85 |
| CDX95813 | Canola | mitochondrion | 22.52 | 26.67 |
| CDY35144 | Canola | mitochondrion | 22.52 | 26.58 |
| CDY65207 | Canola | mitochondrion | 22.25 | 25.78 |
| CDY02744 | Canola | mitochondrion | 16.09 | 25.75 |
| CDY23447 | Canola | mitochondrion | 13.14 | 25.0 |
| CDY71779 | Canola | mitochondrion | 22.79 | 24.15 |
| CDX95970 | Canola | mitochondrion | 23.06 | 23.24 |
| CDX92018 | Canola | mitochondrion | 23.32 | 22.25 |
| CDY33565 | Canola | plastid | 22.52 | 22.11 |
| CDY28818 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 22.52 | 21.99 |
| CDX92019 | Canola | mitochondrion | 22.52 | 21.05 |
| CDX86572 | Canola | mitochondrion | 9.65 | 20.34 |
| CDY41583 | Canola | mitochondrion | 11.8 | 19.05 |
| CDY10122 | Canola | mitochondrion | 33.24 | 17.1 |
Protein Annotations
| EnsemblPlants:CDX94769 | EnsemblPlantsGene:GSBRNA2T00158223001 | InterPro:DUF295 | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF3 | PFAM:PF03478 |
| ProteinID:CDX94769 | ProteinID:CDX94769.1 | SEG:seg | UniParc:UPI0004EE6D3A | MapMan:35.2 | : |
Description
BnaC07g17780D
Coordinates
chrLK031884:+:1140827..1142068
Molecular Weight (calculated)
42830.4 Da
IEP (calculated)
4.538
GRAVY (calculated)
-0.469
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSSSTPTFP FMLIDYLTNF SSVEDDGPVT KWYGSSPPNC YNQKEILIRD WKLREEVLEA MTSGFLRNQS LGFPDYYLSG SGDKFPILLK HKPSEPELTE
101: VSANLPPLPC GTKIQNIAMS CFSDRKKDWV VCVKLPGSQL SLFRPFCNSK WINVKPMPEC ISSLSSIMFS KKDQRFYIPS PGGNHLCSLD LNFNEDDKPR
201: FLRVGFEDYP ESVVSELEEL NSCSRTDHLV ESPTGELFYI KWYYEGEDLD EDENYNDVVR SLTHKTKKFM VFREKETGYA EEKKNETTTY TEDIGDLCIF
301: VGHSQAYCVP ASSSPGLKPN CIYFVGYSFG VYDITTETCT TFFTRDADEE DNEIVPLRRL DFPYWPPPFP ISR
101: VSANLPPLPC GTKIQNIAMS CFSDRKKDWV VCVKLPGSQL SLFRPFCNSK WINVKPMPEC ISSLSSIMFS KKDQRFYIPS PGGNHLCSLD LNFNEDDKPR
201: FLRVGFEDYP ESVVSELEEL NSCSRTDHLV ESPTGELFYI KWYYEGEDLD EDENYNDVVR SLTHKTKKFM VFREKETGYA EEKKNETTTY TEDIGDLCIF
301: VGHSQAYCVP ASSSPGLKPN CIYFVGYSFG VYDITTETCT TFFTRDADEE DNEIVPLRRL DFPYWPPPFP ISR
001: MSKLIINRIF KPSVCKNFLR HANVRLFSSA THTSTKVNQP FSSKPAFPFL LIDYILNNPN SSSDGRVTTN VYGNEKEVLI KDKDLKEEVC DAMTVGFSRD
101: GLRVELCGNH GDVCSPTIFY KPTDPEIEDL TVDLPPLPTG SQIQSLVMSS LPKRDKNWVV VVKLLGSQLS MCRPFGSRKW INIQTKPQNI NPSSSIMFSK
201: KEKKFYVPTP GGNILCYLDP HSEDDDLIDF VELEFDDLPK SVFQELADVS TCSRTDHLVE SPTGQLFLVK WYGEDLEDID NTTLYNVTKK FMVFKEGEKP
301: SCVYTKKMIY TEDIGDLCIF VGHSEAFCVP ASSSPGLKPN CIYFVGYNFG VYDLTTKTCT MFLTKDDNPL RKLEFPYWPP PASFPVLAPN
101: GLRVELCGNH GDVCSPTIFY KPTDPEIEDL TVDLPPLPTG SQIQSLVMSS LPKRDKNWVV VVKLLGSQLS MCRPFGSRKW INIQTKPQNI NPSSSIMFSK
201: KEKKFYVPTP GGNILCYLDP HSEDDDLIDF VELEFDDLPK SVFQELADVS TCSRTDHLVE SPTGQLFLVK WYGEDLEDID NTTLYNVTKK FMVFKEGEKP
301: SCVYTKKMIY TEDIGDLCIF VGHSEAFCVP ASSSPGLKPN CIYFVGYNFG VYDLTTKTCT MFLTKDDNPL RKLEFPYWPP PASFPVLAPN
Arabidopsis Description
Uncharacterized protein At4g25920 [Source:UniProtKB/TrEMBL;Acc:Q8H1S2]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.