CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G67040.1	Thale cress	mitochondrion	21.89	30.91
Bra040901.1-P	Field mustard	mitochondrion	47.64	30.66
CDX86571	Canola	cytosol	11.16	30.23
CDY23447	Canola	mitochondrion	24.46	29.08
CDX86572	Canola	mitochondrion	19.31	25.42
CDY59993	Canola	cytosol, plastid	29.61	25.27
CDY10120	Canola	mitochondrion	34.33	23.67
CDY10119	Canola	mitochondrion	36.05	22.83
CDY47276	Canola	mitochondrion	35.62	22.55
CDY57750	Canola	plastid	36.05	22.52
CDX99887	Canola	extracellular, plasma membrane	33.91	22.25
CDY43323	Canola	mitochondrion	34.76	21.77
CDY15545	Canola	mitochondrion	30.9	21.62
CDX90231	Canola	mitochondrion	33.91	21.58
CDY51469	Canola	mitochondrion	33.48	21.31
CDX90173	Canola	mitochondrion	33.91	21.24
CDY47275	Canola	cytosol	34.76	21.09
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	34.33	20.94
CDY71779	Canola	mitochondrion	30.9	20.45
CDX86573	Canola	mitochondrion	31.76	20.39
CDX95970	Canola	mitochondrion	32.19	20.27
CDX92018	Canola	mitochondrion	33.48	19.95
CDX90232	Canola	mitochondrion	30.47	19.94
CDX83387	Canola	cytosol	30.9	19.89
CDX95813	Canola	mitochondrion	26.61	19.68
CDX95668	Canola	mitochondrion	32.19	19.63
CDX83388	Canola	plastid	32.19	19.58
CDY51468	Canola	mitochondrion	30.04	19.44
CDX95667	Canola	mitochondrion, plastid	31.76	19.42
CDY57749	Canola	mitochondrion	29.18	19.32
CDX92019	Canola	mitochondrion	33.05	19.3
CDY65207	Canola	mitochondrion	26.61	19.25
CDX99797	Canola	plastid	30.9	19.25
CDY28820	Canola	cytosol	30.47	19.03
CDX99796	Canola	mitochondrion	32.19	18.89
CDY27327	Canola	cytosol	14.16	18.75
CDY41583	Canola	mitochondrion	18.45	18.61
CDY15546	Canola	plastid	30.9	18.41
CDX98187	Canola	mitochondrion	28.76	18.36
CDY50787	Canola	cytosol	25.32	18.21
CDY33565	Canola	plastid	29.18	17.89
CDY65427	Canola	cytosol	14.59	17.62
CDX94769	Canola	cytosol	25.75	16.09
CDY48999	Canola	cytosol	25.32	15.21
CDX99886	Canola	cytosol	14.16	15.14
CDY35144	Canola	mitochondrion	20.17	14.87
CDY53420	Canola	cytosol	20.6	14.29
CDY03244	Canola	cytosol	15.02	13.73
CDY10122	Canola	mitochondrion	36.05	11.59

Protein Annotations

EnsemblPlants:CDY02744	EnsemblPlantsGene:GSBRNA2T00114898001	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3	PFAM:PF03478
ProteinID:CDY02744	ProteinID:CDY02744.1	UniParc:UPI0004EDBF40	MapMan:35.2	:	:

Description

BnaC02g11450D

Coordinates

chrLK031937:-:20339..21932

Molecular Weight (calculated)

26946.6 Da

IEP (calculated)

8.363

GRAVY (calculated)

-0.307

Length

233 amino acids

Sequence
(BLAST)

001: MAMFLNRILK LHARRDNARF FSSLPEFPYL LLGGKKLRDS PEGQVGKHMF FDPTKEEKVY SSEKTVPQEL NGQPLLGASQ GWVACRENKE FTVHLTDMHK
101: PWVSSPKVIS LPSIEAWWEM LDKCFMSNHL GHLQPHSIFH SKIEFRVKCS NEDGEWIMMR ITKRFTMFMQ DKKRKEFCYT DDIGDLCIFL GQSEAFCLSA
201: SMYSGLKPNS IYYIGSGLRY YNLASGSFAL EII

Best Arabidopsis Sequence Match ( AT5G55440.1 )
(BLAST)

001: MALFFSRISK LSGRRNNARF FSSLPPSPCL VLTTKKLRGS PEEGLIVHHK LFEPATEKKV YGNEKKYPKE LHGAPLLGAS KGWVAFFKEK DISVHLTDLY
101: KPCVSSPRVI SLPSLKLDYK PATHATEVCL SSSDPVQDDY YVAAKFNDYH VSVCRPRWDS DWTHNETGYS LLPASELMYS KRDKAFHFTS FKGLYMGSLY
201: LSKKDEIKYK EIRLRNLPKI PEAGWEMLDK CSMTNHLVDS PSGELFFIKW YTQCIHKEDE DGDLECLHSK TKRFMVFRQD GMSKDFGYTE DIGDLCIFLG
301: KSEAFCVTAS LYPGLKPNSI YYLGPRFGSY DLASGTNSSF TFDRFGKPSL VVPYWIHSTS SLSSS

Arabidopsis Description

F-box protein, putative (DUF295) [Source:UniProtKB/TrEMBL;Acc:Q9FJ66]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.