Factsheet for Bra040901.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G67040.1	Thale cress	mitochondrion	30.94	67.88
Bra020431.1-P	Field mustard	mitochondrion	56.08	56.23
CDY02744	Canola	mitochondrion	30.66	47.64
Bra015434.1-P	Field mustard	cytosol	35.91	38.01
Bra010792.1-P	Field mustard	cytosol	17.4	35.59
Bra010793.1-P	Field mustard	mitochondrion	35.64	35.25
Bra030614.1-P	Field mustard	mitochondrion	33.7	34.56
Bra030615.1-P	Field mustard	mitochondrion	33.98	33.98
Bra015433.1-P	Field mustard	mitochondrion	33.7	33.15
Bra022669.1-P	Field mustard	cytosol	33.43	32.44
Bra010846.1-P	Field mustard	mitochondrion	33.15	32.26
Bra039286.1-P	Field mustard	mitochondrion	30.66	31.99
Bra032294.1-P	Field mustard	cytosol	28.18	31.48
Bra010791.1-P	Field mustard	mitochondrion	30.94	31.46
Bra022671.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	32.87	31.15
Bra000406.1-P	Field mustard	cytosol	30.94	30.94
Bra000405.1-P	Field mustard	plastid	32.87	30.91
Bra004352.1-P	Field mustard	mitochondrion	31.22	30.38
Bra033734.1-P	Field mustard	cytosol	27.07	25.26
Bra017579.1-P	Field mustard	cytosol	16.02	20.28

Protein Annotations

EnsemblPlants:Bra040901.1	EnsemblPlants:Bra040901.1-P	EnsemblPlantsGene:Bra040901	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3
PFAM:PF03478	SEG:seg	UniParc:UPI000253EA54	UniProt:M4FIH2	MapMan:35.2	:

Description

AT5G55440 (E=3e-103) | unknown protein

Coordinates

chrScaffold000302:+:21428..22599

Molecular Weight (calculated)

40839.1 Da

IEP (calculated)

8.457

GRAVY (calculated)

-0.262

Length

362 amino acids

Sequence
(BLAST)

001: MSLFISRVRN LSAYRVVSAR FFSSLPPESP CFLLSDKTVK ECRESGERIV RYRIFDPRTE QVVTTSEKKL PKELIGQTLF GSSQGWVASM DSKDLPINLT
101: DVYKPLVTSP RVIPLPSLGF YPRPFTTELS LSSQCPDQDQ EDFTVAAKFC GTHLSVCTPC LNSEWIHIET SLPLVPASEL MYSKRDKAFY FTSAKGLYMG
201: SLPLSSNKKE KKKIKYQEVR LCNFPKIPGE MLDRCFASKH LVESPSGDLF LVKWYAQCTH IEEDGNGEAQ GIHSKTKRFM VFRQDKKRRG YFSYTEDIGD
301: LCIFLSKGEA LCLSSSMYPG LKPNSIYYIG HGLGSYDLAS GAVHSFESLG ATMLNHAPFW IH

Best Arabidopsis Sequence Match ( AT5G55440.1 )
(BLAST)

001: MALFFSRISK LSGRRNNARF FSSLPPSPCL VLTTKKLRGS PEEGLIVHHK LFEPATEKKV YGNEKKYPKE LHGAPLLGAS KGWVAFFKEK DISVHLTDLY
101: KPCVSSPRVI SLPSLKLDYK PATHATEVCL SSSDPVQDDY YVAAKFNDYH VSVCRPRWDS DWTHNETGYS LLPASELMYS KRDKAFHFTS FKGLYMGSLY
201: LSKKDEIKYK EIRLRNLPKI PEAGWEMLDK CSMTNHLVDS PSGELFFIKW YTQCIHKEDE DGDLECLHSK TKRFMVFRQD GMSKDFGYTE DIGDLCIFLG
301: KSEAFCVTAS LYPGLKPNSI YYLGPRFGSY DLASGTNSSF TFDRFGKPSL VVPYWIHSTS SLSSS

Arabidopsis Description

F-box protein, putative (DUF295) [Source:UniProtKB/TrEMBL;Acc:Q9FJ66]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.