CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98187	Canola	mitochondrion	82.67	79.73
CDY10120	Canola	mitochondrion	47.73	49.7
CDY10119	Canola	mitochondrion	51.42	49.18
CDY57750	Canola	plastid	51.99	49.06
CDY47276	Canola	mitochondrion	51.14	48.91
CDX86571	Canola	cytosol	11.93	48.84
CDX86572	Canola	mitochondrion	24.43	48.59
CDY50787	Canola	cytosol	44.03	47.84
CDX99886	Canola	cytosol	29.55	47.71
CDX90232	Canola	mitochondrion	48.01	47.47
CDY43323	Canola	mitochondrion	50.0	47.31
CDX90173	Canola	mitochondrion	49.43	46.77
CDX99797	Canola	plastid	49.43	46.52
CDY51468	Canola	mitochondrion	47.44	46.39
CDX86573	Canola	mitochondrion	47.44	46.01
CDY51469	Canola	mitochondrion	46.88	45.08
CDX90231	Canola	mitochondrion	46.88	45.08
CDY47275	Canola	cytosol	48.86	44.79
CDY15545	Canola	mitochondrion	42.33	44.74
CDX99796	Canola	mitochondrion	47.44	42.07
CDY15546	Canola	plastid	46.02	41.43
CDX99887	Canola	extracellular, plasma membrane	41.48	41.13
CDX95667	Canola	mitochondrion, plastid	44.03	40.68
CDX83388	Canola	plastid	43.47	39.95
CDY59993	Canola	cytosol, plastid	28.98	37.36
CDX83387	Canola	cytosol	38.35	37.29
CDX95668	Canola	mitochondrion	40.34	37.17
CDY65427	Canola	cytosol	19.32	35.23
CDY48999	Canola	cytosol	35.23	31.96
CDX95813	Canola	mitochondrion	28.41	31.75
CDX94769	Canola	cytosol	32.95	31.1
CDY65207	Canola	mitochondrion	28.12	30.75
CDY27327	Canola	cytosol	15.34	30.68
CDY23447	Canola	mitochondrion	17.05	30.61
CDY28820	Canola	cytosol	32.1	30.29
CDY71779	Canola	mitochondrion	29.83	29.83
CDY41583	Canola	mitochondrion	19.32	29.44
CDY02744	Canola	mitochondrion	19.32	29.18
CDY53420	Canola	cytosol	26.99	28.27
CDY03244	Canola	cytosol	20.17	27.84
CDY33565	Canola	plastid	29.55	27.37
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	29.55	27.23
CDX92018	Canola	mitochondrion	29.55	26.6
CDX95970	Canola	mitochondrion	27.84	26.49
CDY10122	Canola	mitochondrion	51.7	25.1
CDY35144	Canola	mitochondrion	22.44	25.0
CDX92019	Canola	mitochondrion	27.84	24.56

Protein Annotations

EnsemblPlants:CDY57749	EnsemblPlantsGene:GSBRNA2T00022596001	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3	PFAM:PF03478
ProteinID:CDY57749	ProteinID:CDY57749.1	UniParc:UPI0004EB160D	UniProt:A0A078J2N7	MapMan:35.2	:

Description

BnaCnng32340DBnaCnng32340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2N7]

Coordinates

chrLK033601:-:29683..30894

Molecular Weight (calculated)

40029.4 Da

IEP (calculated)

4.659

GRAVY (calculated)

-0.194

Length

352 amino acids

Sequence
(BLAST)

001: MSQVLTRLSK ASPLRGFRMF SSSSVTGPFL RLGSMVKVDK DVPDDILLFD AAKEEYLTVP ETPLPQELAD TTVVESSHGW GFFSCFSDRS LYISDHLNPL
101: SSSSKVIPLP PLTALSSCQT DVFCNVAMSS SFPSDDDQDL VLAVKFLGRQ LSLCRPNRDL RWTNIATPFP FLERSNLMYS NRDRKFYLPL PGSTYLCSWD
201: LHFTPSFRNF VYTNRPRLSQ SEHELLDSCS RADHWVESPS GERFLVKCYA NDTLERDPVF MVFREEEMTD GETFNMHYTE DIGDLCIFIS QTDPFCVQAS
301: SCPGLVPNSI YLVESFFGVY HLPTKSLRPF EENLEMNDVQ PILPHWLPPV SV

Best Arabidopsis Sequence Match ( AT1G05540.1 )
(BLAST)

001: MSQLLFRLSK LSSRNNELIH KSVRLFSTSP YLTLGSVVED LPEEDGSYIG DILLFDPAKE ELVTVRDKTI PEKLVNSRVV GASHGWTFFS DRCNHNSVCI
101: SDLFTPMASK SNTKIIPLPL LTTMIYGQTE AVWNVAMSSS SPHQDNEEED CVVAINFLGS QLSVCRPGRD HGWTNKQIPF ICSENSNLMY SKRDQRFYLP
201: APGGNYLCSW DLHFDNDPKF NELVFLNLPE LPQSEWELLN SCFKEDHWVE SPSGQSFLVK WYSHIPSQRY KDPILMVLRE DEETEEGTRN MCYTEDIGDL
301: CIFLSKSDPF CVVASSCPGL KPNSIYLMGR CFAVYDLTTR TARHFKAPKG GPERVPFLPY WLPPFSI

Arabidopsis Description

T25N20.19 [Source:UniProtKB/TrEMBL;Acc:Q9ZVY4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.