CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43323	Canola	mitochondrion	61.39	61.56
CDX90173	Canola	mitochondrion	61.13	61.29
CDX86571	Canola	cytosol	12.87	55.81
CDY10120	Canola	mitochondrion	48.79	53.85
CDX86573	Canola	mitochondrion	50.67	52.07
CDY57749	Canola	mitochondrion	49.06	51.99
CDX86572	Canola	mitochondrion	24.4	51.41
CDY15545	Canola	mitochondrion	45.58	51.05
CDX90231	Canola	mitochondrion	49.06	50.0
CDY51469	Canola	mitochondrion	49.06	50.0
CDX98187	Canola	mitochondrion	48.53	49.59
CDY47275	Canola	cytosol	50.94	49.48
CDY10119	Canola	mitochondrion	48.26	48.91
CDY50787	Canola	cytosol	42.09	48.46
CDY47276	Canola	mitochondrion	47.45	48.1
CDX99887	Canola	extracellular, plasma membrane	45.04	47.32
CDX99796	Canola	mitochondrion	49.6	46.6
CDX99886	Canola	cytosol	27.08	46.33
CDX99797	Canola	plastid	46.38	46.26
CDX90232	Canola	mitochondrion	41.29	43.26
CDY51468	Canola	mitochondrion	41.55	43.06
CDY15546	Canola	plastid	44.5	42.46
CDX83388	Canola	plastid	43.16	42.04
CDX95667	Canola	mitochondrion, plastid	42.09	41.21
CDY59993	Canola	cytosol, plastid	28.95	39.56
CDX83387	Canola	cytosol	38.34	39.5
CDX95668	Canola	mitochondrion	39.14	38.22
CDY23447	Canola	mitochondrion	19.84	37.76
CDY65427	Canola	cytosol	18.77	36.27
CDX95813	Canola	mitochondrion	30.56	36.19
CDY02744	Canola	mitochondrion	22.52	36.05
CDY27327	Canola	cytosol	16.62	35.23
CDY65207	Canola	mitochondrion	29.22	33.85
CDX94769	Canola	cytosol	32.44	32.44
CDX95970	Canola	mitochondrion	31.37	31.62
CDY03244	Canola	cytosol	21.45	31.37
CDY28820	Canola	cytosol	31.1	31.1
CDY28818	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	31.64	30.89
CDY48999	Canola	cytosol	31.9	30.67
CDY33565	Canola	plastid	31.1	30.53
CDY53420	Canola	cytosol	27.35	30.36
CDY71779	Canola	mitochondrion	28.15	29.83
CDY41583	Canola	mitochondrion	18.23	29.44
CDX92018	Canola	mitochondrion	28.69	27.37
CDY35144	Canola	mitochondrion	22.79	26.9
CDY10122	Canola	mitochondrion	51.47	26.48
CDX92019	Canola	mitochondrion	26.01	24.31

Protein Annotations

EnsemblPlants:CDY57750	EnsemblPlantsGene:GSBRNA2T00022597001	InterPro:DUF295	PANTHER:PTHR31681	PANTHER:PTHR31681:SF3	PFAM:PF03478
ProteinID:CDY57750	ProteinID:CDY57750.1	SEG:seg	UniParc:UPI0004EDD84B	UniProt:A0A078J4Q2	MapMan:35.2

Description

BnaCnng32350DBnaCnng32350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4Q2]

Coordinates

chrLK033601:+:31436..32770

Molecular Weight (calculated)

42244.1 Da

IEP (calculated)

5.936

GRAVY (calculated)

-0.307

Length

373 amino acids

Sequence
(BLAST)

001: MSRFFFGLAK LSPVSSDVLA HKRRSFRLFS SSLATTTPYL SLGDTLKKHS PDDGTETRDV VFFDPVKEER LTITDKTFPQ ELVHSRQIGS SHGWGIFSRD
101: GERSVCMSNV YHPLSPKSNP EIIPLPSLTA LPDNQTGVVW NVAMSSSSPS DDDEDCVVAI KFLGNQLSLC RPNRDLRWTN VETLGMLETS NLMYSKRDQR
201: FYLPAPGGNE LYSWDLNLDK KNFSPELHQV VFRDLPELAE SEWGLLDMVC SRTEHLVESA STGECFLVKC YAQGYPWSEK FKYMIRRFMV FREEETTQGR
301: YMCYTEDIGD LCIFLSKSEA FCVQATSCPG LQPNSIYFIG KGFGIYSLAD NKTIRSFKVP SSSGLYWLPP SCI

Best Arabidopsis Sequence Match ( AT1G05540.1 )
(BLAST)

001: MSQLLFRLSK LSSRNNELIH KSVRLFSTSP YLTLGSVVED LPEEDGSYIG DILLFDPAKE ELVTVRDKTI PEKLVNSRVV GASHGWTFFS DRCNHNSVCI
101: SDLFTPMASK SNTKIIPLPL LTTMIYGQTE AVWNVAMSSS SPHQDNEEED CVVAINFLGS QLSVCRPGRD HGWTNKQIPF ICSENSNLMY SKRDQRFYLP
201: APGGNYLCSW DLHFDNDPKF NELVFLNLPE LPQSEWELLN SCFKEDHWVE SPSGQSFLVK WYSHIPSQRY KDPILMVLRE DEETEEGTRN MCYTEDIGDL
301: CIFLSKSDPF CVVASSCPGL KPNSIYLMGR CFAVYDLTTR TARHFKAPKG GPERVPFLPY WLPPFSI

Arabidopsis Description

T25N20.19 [Source:UniProtKB/TrEMBL;Acc:Q9ZVY4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.