CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX96611
CDY33660
CDY41709
CDY67022
CDY67203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29480.1	CDX96611	AT1G20950.1	21798944
AT2G29480.1	CDY33660	AT1G20950.1	21798944
AT2G29480.1	CDY67022	AT1G20950.1	21798944
AT2G29480.1	CDY67203	AT1G20950.1	21798944
AT2G29480.1	CDY41709	AT5G22355.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51364	Canola	cytosol	93.3	93.3
AT2G29480.1	Thale cress	cytosol	87.95	87.56
CDY45446	Canola	cytosol	75.89	75.89
CDY51366	Canola	cytosol	75.0	75.0
CDX97884	Canola	cytosol	74.55	74.55
CDY53373	Canola	cytosol	74.55	74.55
VIT_06s0004g05680.t01	Wine grape	cytosol	33.93	69.72
CDY40167	Canola	cytosol	68.3	68.3
CDX97883	Canola	cytosol	69.2	67.98
CDY45445	Canola	cytosol	67.86	67.86
CDY51365	Canola	cytosol	68.75	67.54
CDX83309	Canola	cytosol	66.96	66.96
CDY72138	Canola	cytosol	66.96	66.96
VIT_06s0004g05710.t01	Wine grape	cytosol	23.21	66.67
CDY18883	Canola	cytosol, extracellular	47.77	63.69
CDY01992	Canola	cytosol, vacuole	31.7	56.8
CDY51369	Canola	cytosol	54.46	54.22
CDX97887	Canola	cytosol	53.12	52.89
VIT_06s0004g05700.t01	Wine grape	cytosol	48.66	49.55
VIT_14s0060g02170.t01	Wine grape	cytosol	48.66	47.19
CDY22184	Canola	cytosol	45.09	44.69
CDX86895	Canola	cytosol	38.84	37.18
CDY59707	Canola	cytosol	37.95	36.64
CDY00291	Canola	cytosol	37.95	36.32
CDX73100	Canola	cytosol	34.82	33.62
CDX73101	Canola	cytosol	33.93	32.76
CDX96555	Canola	cytosol	33.48	32.19
VIT_06s0004g05670.t01	Wine grape	cytosol	50.0	31.82

Protein Annotations

Gene3D:1.20.1050.10	MapMan:18.8.1.4	Gene3D:3.40.30.10	EnsemblPlants:CDX97882	ProteinID:CDX97882	ProteinID:CDX97882.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00105219001	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like
InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	PFAM:PF00043	PFAM:PF02798
PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR11260	PANTHER:PTHR11260:SF486	SUPFAM:SSF47616	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	UniParc:UPI0004EDDB65	SEG:seg	:	:	:

Description

BnaC04g40570D

Coordinates

chrLK031901:+:1199299..1200164

Molecular Weight (calculated)

26000.0 Da

IEP (calculated)

6.534

GRAVY (calculated)

-0.251

Length

224 amino acids

Sequence
(BLAST)

001: MAKKEERVKL LGFWISPFSR RVEMALKLKG VPYEYLEEEL PKKSPLLLEL NPVHKKVPVL VHNDKILSES HVILEYIDQT WSNNPILPQD PYERATARFW
101: AKFVDEQILP AGFMPLVKPE KGIEVAIEET RELIMFLEKE VTGKDFFGGK TIGFLDMVAG TMIPFCLARA WECMGVDMIS EDKFPGLDRW IKKLNEVEIV
201: RECIPPKEKH IERMNKIIER SKSS

Best Arabidopsis Sequence Match ( AT2G29480.1 )
(BLAST)

001: MAKKEESVKL LGFWISPFSR RVEMALKLKG VPYEYLEEDL PKKSTLLLEL NPVHKKVPVL VHNDKLLSES HVILEYIDQT WNNNPILPHD PYEKAMVRFW
101: AKFVDEQILP VGFMPLVKAE KGIDVAIEEI REMLMFLEKE VTGKDFFGGK TIGFLDMVAG SMIPFCLARA WECLGIDMTP EDTFPELNRW IKNLNEVEIV
201: RECIPPKEKH IERMKKIIER AKSTF

Arabidopsis Description

GSTU2Glutathione S-transferase U2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW29]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.