CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51365	Canola	cytosol	97.37	97.37
CDY18883	Canola	cytosol, extracellular	70.61	95.83
AT2G29470.1	Thale cress	cytosol	83.77	84.89
CDY51366	Canola	cytosol	74.12	75.45
CDX97884	Canola	cytosol	73.25	74.55
CDY45446	Canola	cytosol	69.3	70.54
CDY51364	Canola	cytosol	68.86	70.09
CDY53373	Canola	cytosol	68.42	69.64
CDX97882	Canola	cytosol	67.98	69.2
VIT_06s0004g05710.t01	Wine grape	cytosol	23.25	67.95
VIT_06s0004g05680.t01	Wine grape	cytosol	31.58	66.06
CDY72138	Canola	cytosol	60.09	61.16
CDX83309	Canola	cytosol	60.09	61.16
CDY40167	Canola	cytosol	59.21	60.27
CDY45445	Canola	cytosol	58.33	59.38
CDY51369	Canola	cytosol	47.37	48.0
CDX97887	Canola	cytosol	46.05	46.67
CDY01992	Canola	cytosol, vacuole	25.44	46.4
VIT_06s0004g05700.t01	Wine grape	cytosol	44.74	46.36
CDY22184	Canola	cytosol	44.3	44.69
VIT_14s0060g02170.t01	Wine grape	cytosol	44.3	43.72
CDY00291	Canola	cytosol	36.84	35.9
CDX86895	Canola	cytosol	36.4	35.47
CDY59707	Canola	cytosol	35.96	35.34
CDX73100	Canola	cytosol	32.89	32.33
CDX73101	Canola	cytosol	32.02	31.47
CDX96555	Canola	cytosol	31.58	30.9
VIT_06s0004g05670.t01	Wine grape	cytosol	47.37	30.68

Protein Annotations

Gene3D:1.20.1050.10	MapMan:18.8.1.4	Gene3D:3.40.30.10	EnsemblPlants:CDX97883	ProteinID:CDX97883	ProteinID:CDX97883.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00105220001	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf
InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	PFAM:PF02798	PFAM:PF13410	PFscan:PS50404
PFscan:PS50405	PANTHER:PTHR11260	PANTHER:PTHR11260:SF486	SUPFAM:SSF47616	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
UniParc:UPI0004EDAFE2	SEG:seg	:	:	:	:

Description

BnaC04g40560D

Coordinates

chrLK031901:+:1201941..1203053

Molecular Weight (calculated)

26384.6 Da

IEP (calculated)

7.498

GRAVY (calculated)

-0.135

Length

228 amino acids

Sequence
(BLAST)

001: MAEKEEYVKL IGSWASPFSR RVEMALKLKG VPYDYSDEDY LVTKSPLLLQ LNPIYKKVPV FVHKGKVLLE SHLILEYIDQ TWTRNPILPQ DPYGKAMARF
101: WAKFVDEQVT LIGFRSLVKS EEIDVAIKEA QELITYLEKE ITGKMFFGGE TIGFLDIVVG SMIPFCLVRG WEGMGIDMIP KEKFPELNRW IEKIKEIEIV
201: RECIPNREKN IEHMMKIVGR IKAASKTP

Best Arabidopsis Sequence Match ( AT2G29470.1 )
(BLAST)

001: MAEKEEGVKL IGSWASPFSR RVEMALKLKG VPYDYLDEDY LVVKSPLLLQ LNPVYKKVPV LVHNGKILPE SQLILEYIDQ TWTNNPILPQ SPYDKAMARF
101: WAKFVDEQVT MIGLRSLVKS EKRIDVAIEE VQELIMLLEN QITGKKLFGG ETIGFLDMVV GSMIPFCLAR AWEGMGIDMI PEEKFPELNR WIKNLKEIEI
201: VRECIPDREK HIEHMMKIVG RIKAV

Arabidopsis Description

GSTU3Glutathione S-transferase U3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.