Factsheet for VIT_14s0060g02170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g05670.t01
VIT_06s0004g05680.t01
VIT_06s0004g05700.t01
VIT_06s0004g05710.t01
VIT_10s0003g04250.t01
VIT_14s0060g02170.t01
VIT_18s0122g00510.t01
VIT_19s0093g00320.t01
VIT_19s0093g00350.t01
VIT_19s0093g00370.t01
VIT_19s0093g00400.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29420.1	VIT_10s0003g04250.t01	AT1G17190.1	21798944
AT2G29420.1	VIT_19s0093g00320.t01	AT1G17190.1	21798944
AT2G29420.1	VIT_19s0093g00350.t01	AT1G17190.1	21798944
AT2G29420.1	VIT_19s0093g00370.t01	AT1G17190.1	21798944
AT2G29420.1	VIT_19s0093g00400.t01	AT1G17190.1	21798944
AT2G29420.1	VIT_10s0003g04250.t01	AT1G78380.1	21798944
AT2G29420.1	VIT_19s0093g00320.t01	AT1G78380.1	21798944
AT2G29420.1	VIT_19s0093g00350.t01	AT1G78380.1	21798944
AT2G29420.1	VIT_19s0093g00370.t01	AT1G78380.1	21798944
AT2G29420.1	VIT_19s0093g00400.t01	AT1G78380.1	21798944
AT2G29420.1	VIT_06s0004g05670.t01	AT2G29490.1	21798944
AT2G29420.1	VIT_06s0004g05680.t01	AT2G29490.1	21798944
AT2G29420.1	VIT_06s0004g05700.t01	AT2G29490.1	21798944
AT2G29420.1	VIT_06s0004g05710.t01	AT2G29490.1	21798944
AT2G29420.1	VIT_14s0060g02170.t01	AT2G29490.1	21798944
AT2G29480.1	VIT_18s0122g00510.t01	AT1G20950.1	21798944
AT2G29490.1	VIT_10s0003g04250.t01	AT1G17180.1	21798944
AT2G29490.1	VIT_19s0093g00320.t01	AT1G17180.1	21798944
AT2G29490.1	VIT_19s0093g00350.t01	AT1G17180.1	21798944
AT2G29490.1	VIT_19s0093g00370.t01	AT1G17180.1	21798944
AT2G29490.1	VIT_19s0093g00400.t01	AT1G17180.1	21798944
AT2G29490.1	VIT_10s0003g04250.t01	AT1G78380.1	21798944
AT2G29490.1	VIT_19s0093g00320.t01	AT1G78380.1	21798944
AT2G29490.1	VIT_19s0093g00350.t01	AT1G78380.1	21798944
AT2G29490.1	VIT_19s0093g00370.t01	AT1G78380.1	21798944
AT2G29490.1	VIT_19s0093g00400.t01	AT1G78380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g05680.t01	Wine grape	cytosol	34.2	72.48
VIT_06s0004g05710.t01	Wine grape	cytosol	24.24	71.79
VIT_06s0004g05700.t01	Wine grape	cytosol	59.31	62.27
VIT_08s0007g01410.t01	Wine grape	cytosol	54.98	57.47
VIT_08s0007g01420.t01	Wine grape	cytosol	54.11	57.34
VIT_17s0000g06120.t01	Wine grape	cytosol	27.27	57.27
VIT_08s0007g01400.t01	Wine grape	cytosol	54.55	57.01
VIT_05s0051g00130.t01	Wine grape	endoplasmic reticulum	43.29	50.0
CDX97882	Canola	cytosol	47.19	48.66
VIT_15s0024g01630.t01	Wine grape	cytosol	44.59	48.58
VIT_00s0153g00050.t01	Wine grape	endoplasmic reticulum	46.75	48.0
AT2G29490.1	Thale cress	cytosol	46.32	47.77
Bra039984.1-P	Field mustard	cytosol	45.89	47.75
CDY51369	Canola	cytosol	46.32	47.56
CDY51364	Canola	cytosol	45.89	47.32
Bra039980.1-P	Field mustard	cytosol	45.89	47.11
CDX97887	Canola	cytosol	45.89	47.11
VIT_05s0051g00180.t01	Wine grape	endoplasmic reticulum	44.59	47.03
CDY51366	Canola	cytosol	45.45	46.88
AT2G29420.1	Thale cress	cytosol	45.89	46.7
AT2G29480.1	Thale cress	cytosol	45.45	46.67
VIT_07s0005g04880.t01	Wine grape	cytosol	44.59	46.4
CDX97884	Canola	cytosol	44.59	45.98
AT2G29460.1	Thale cress	cytosol	44.59	45.98
VIT_15s0024g01650.t01	Wine grape	cytosol	44.59	45.78
VIT_17s0000g02930.t01	Wine grape	cytosol	44.59	45.78
AT2G29470.1	Thale cress	cytosol	44.59	45.78
VIT_15s0024g01540.t01	Wine grape	cytosol	45.02	45.61
Bra039982.1-P	Field mustard	cytosol	44.16	45.54
VIT_05s0051g00110.t01	Wine grape	cytosol	44.16	45.54
VIT_16s0039g01070.t01	Wine grape	cytosol	46.32	45.34
VIT_17s0000g02950.t01	Wine grape	cytosol	44.16	45.33
VIT_17s0000g02920.t01	Wine grape	extracellular	43.29	45.25
VIT_07s0005g04890.t01	Wine grape	cytosol	43.29	44.84
AT2G29440.1	Thale cress	cytosol	43.29	44.84
AT2G29450.1	Thale cress	cytosol	43.29	44.64
CDY40167	Canola	cytosol	43.29	44.64
VIT_07s0005g04870.t01	Wine grape	cytosol	43.72	44.49
CDX97883	Canola	cytosol	43.72	44.3
CDY45445	Canola	cytosol	42.86	44.2
VIT_00s0153g00070.t01	Wine grape	cytosol	44.16	44.16
VIT_16s0039g00970.t01	Wine grape	cytosol	45.02	44.07
VIT_08s0040g00920.t01	Wine grape	cytosol	43.29	44.05
Bra018386.1-P	Field mustard	cytosol	42.42	43.75
CDY72138	Canola	cytosol	42.42	43.75
CDY53373	Canola	cytosol	42.42	43.75
Bra000474.1-P	Field mustard	cytosol	42.42	43.75
CDX83309	Canola	cytosol	42.42	43.75
VIT_18s0001g07010.t01	Wine grape	cytosol	32.9	43.68
VIT_16s0039g00990.t01	Wine grape	cytosol	44.59	43.64
CDY45446	Canola	cytosol	41.99	43.3
Bra039983.1-P	Field mustard	cytosol	42.42	42.98
CDY51365	Canola	cytosol	42.42	42.98
VIT_17s0000g06140.t01	Wine grape	cytosol	42.86	42.86
VIT_17s0000g06110.t01	Wine grape	cytosol	43.29	42.37
VIT_17s0000g06130.t01	Wine grape	cytosol	41.13	41.85
VIT_01s0026g02400.t01	Wine grape	cytosol	41.13	41.85
VIT_06s0004g05670.t01	Wine grape	cytosol	63.64	41.76
VIT_05s0049g01120.t01	Wine grape	endoplasmic reticulum	40.69	41.41
VIT_05s0049g01100.t01	Wine grape	endoplasmic reticulum	40.69	41.41
VIT_05s0049g01090.t01	Wine grape	endoplasmic reticulum	40.69	41.41
VIT_17s0000g02940.t01	Wine grape	cytosol	31.17	40.68
VIT_05s0049g01070.t01	Wine grape	cytosol, endoplasmic reticulum	39.83	40.53
VIT_01s0026g02370.t01	Wine grape	cytosol	39.83	40.35
VIT_01s0026g02390.t01	Wine grape	cytosol	39.39	39.91
CDY18883	Canola	cytosol, extracellular	29.0	39.88
VIT_05s0049g01080.t01	Wine grape	cytosol, endoplasmic reticulum	39.83	38.49
VIT_18s0072g00320.t01	Wine grape	cytosol	45.45	37.5
Bra018385.1-P	Field mustard	cytosol	29.87	36.32
VIT_15s0107g00150.t01	Wine grape	endoplasmic reticulum, plastid	38.96	33.33
CDY01992	Canola	cytosol, vacuole	16.45	30.4
VIT_17s0000g06150.t01	Wine grape	cytosol, plastid	22.08	30.18

Protein Annotations

Gene3D:1.20.1050.10	EntrezGene:100258047	wikigene:100258047	MapMan:18.8.1.4	Gene3D:3.40.30.10	EMBL:AM487027
ProteinID:CAN62219	ProteinID:CAN62219.1	ProteinID:CCB61862	ProteinID:CCB61862.1	UniProt:F6I4M5	EMBL:FN596746
GO:GO:0003674	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006749	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009407	GO:GO:0009987	GO:GO:0016740	GO:GO:0019748	InterPro:GST_C
InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	EntrezGene:LOC100258047
wikigene:LOC100258047	PFAM:PF00043	PFAM:PF02798	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR11260
PANTHER:PTHR11260:SF486	SUPFAM:SSF47616	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI00021099A4	ArrayExpress:VIT_14s0060g02170
EnsemblPlantsGene:VIT_14s0060g02170	EnsemblPlants:VIT_14s0060g02170.t01	RefSeq:XP_002283736	RefSeq:XP_002283736.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:-:1745819..1757370

Molecular Weight (calculated)

26802.2 Da

IEP (calculated)

8.423

GRAVY (calculated)

-0.520

Length

231 amino acids

Sequence
(BLAST)

001: MADQVQLFGV WGSFFGRRVE VALRLKGVQF EYVEEDLYNK SPSLLKYNPV HKKIPQRGPP DTRGDNMLHN GNPLAESLVI LEYIDETWKH NPIFPKDPYE
101: RARARFWAKF IDEKLWPVVR KALGSKEEKE QREAIGETHE HLETLESELK EKKFFGGESW GYLDIAAMVI IWLGIAQEAL GVEFIPKEKF PRLHKWQQRL
201: VEDAVFKECV PPREKLGAFF KARFGSSAAS K

Best Arabidopsis Sequence Match ( AT3G09270.1 )
(BLAST)

001: MNQEEHVKLL GLWGSPFSKR VEMVLKLKGI PYEYIEEDVY GNRSPMLLKY NPIHKKVPVL IHNGRSIAES LVIVEYIEDT WKTTHTILPQ DPYERAMARF
101: WAKYVDEKVM LAVKKACWGP ESEREKEVKE AYEGLKCLEK ELGDKLFFGG ETIGFVDIAA DFIGYWLGIF QEASGVTIMT AEEFPKLQRW SEDFVGNNFI
201: KEVLPPKEKL VAVLKAMFGS VTSN

Arabidopsis Description

GSTU8Glutathione S-transferase U8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.