CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68016
CDX79261
CDX83922
CDX96787
CDY14615
CDY26861
CDY45446
CDY48477
CDY53373

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29420.1	CDX83922	AT1G17190.1	21798944
AT2G29420.1	CDX96787	AT1G17190.1	21798944
AT2G29420.1	CDY48477	AT1G17190.1	21798944
AT2G29420.1	CDX68016	AT1G78380.1	21798944
AT2G29420.1	CDX79261	AT1G78380.1	21798944
AT2G29420.1	CDY14615	AT1G78380.1	21798944
AT2G29420.1	CDY26861	AT1G78380.1	21798944
AT2G29420.1	CDY45446	AT2G29490.1	21798944
AT2G29420.1	CDY53373	AT2G29490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51369	Canola	cytosol	96.44	96.44
Bra039980.1-P	Field mustard	cytosol	96.0	96.0
AT2G29420.1	Thale cress	cytosol	85.33	84.58
VIT_06s0004g05710.t01	Wine grape	cytosol	25.33	73.08
VIT_06s0004g05680.t01	Wine grape	cytosol	35.11	72.48
CDY40167	Canola	cytosol	53.78	54.02
CDY72138	Canola	cytosol	53.33	53.57
CDX83309	Canola	cytosol	53.33	53.57
CDY45445	Canola	cytosol	53.33	53.57
CDX97882	Canola	cytosol	52.89	53.12
VIT_06s0004g05700.t01	Wine grape	cytosol	51.11	52.27
CDY51364	Canola	cytosol	52.0	52.23
CDY51366	Canola	cytosol	51.56	51.79
CDX97884	Canola	cytosol	51.11	51.34
CDY45446	Canola	cytosol	50.22	50.45
CDY53373	Canola	cytosol	50.22	50.45
CDX97883	Canola	cytosol	46.67	46.05
VIT_14s0060g02170.t01	Wine grape	cytosol	47.11	45.89
CDY51365	Canola	cytosol	45.78	45.18
CDY22184	Canola	cytosol	44.0	43.81
CDX86895	Canola	cytosol	44.44	42.73
CDY00291	Canola	cytosol	42.67	41.03
CDY01992	Canola	cytosol, vacuole	21.33	38.4
CDY18883	Canola	cytosol, extracellular	28.44	38.1
CDY59707	Canola	cytosol	38.67	37.5
CDX73100	Canola	cytosol	36.44	35.34
CDX73101	Canola	cytosol	36.0	34.91
VIT_06s0004g05670.t01	Wine grape	cytosol	53.78	34.38
CDX96555	Canola	cytosol	35.11	33.91

Protein Annotations

Gene3D:1.20.1050.10	MapMan:18.8.1.4	Gene3D:3.40.30.10	EnsemblPlants:CDX97887	ProteinID:CDX97887	ProteinID:CDX97887.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00105224001	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like
InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	PFAM:PF00043	PFAM:PF02798
PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR11260	PANTHER:PTHR11260:SF486	SUPFAM:SSF47616	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	UniParc:UPI0004EE967B	SEG:seg	:	:	:

Description

BnaC04g40520D

Coordinates

chrLK031901:+:1216445..1217439

Molecular Weight (calculated)

25715.5 Da

IEP (calculated)

5.046

GRAVY (calculated)

-0.044

Length

225 amino acids

Sequence
(BLAST)

001: MAERSEEVKL LGMWASPFSR RVEIALTLKG LPYEFSEQDI ANKSPLLLQS NPVHKMIPVL LHNGKPISES LVILEYIDET WQNNPILPQD PYDRAIARFW
101: ARFVDEQIYV TAMKVVGKVG EEKDAAVEAT RDLLKLMEKE LVGKDFLGGE SLGFVDIVAT LVAFWLMRTE EVVGVKVVPV EMFPEIHRWV KNLLDVDVIK
201: KCIPPEDEHL NYIRARMDSL KLKSV

Best Arabidopsis Sequence Match ( AT2G29420.1 )
(BLAST)

001: MAERSNSEEV KLLGMWASPF SRRIEIALTL KGVSYEFLEQ DITNKSSLLL QLNPVHKMIP VLVHNGKPIS ESLVILEYID ETWRDNPILP QDPYERTMAR
101: FWSKFVDEQI YVTAMKVVGK TGKERDAVVE ATRDLLMFLE KELVGKDFLG GKSLGFVDIV ATLVAFWLMR TEEIVGVKVV PVEKFPEIHR WVKNLLGNDV
201: IKKCIPPEDE HLKYIRARME KLNIKSA

Arabidopsis Description

GSTU7Glutathione S-transferase U7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.