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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, secretory
BaCelLo:cytosol
MultiLoc:cytosol
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX83922
CDX96787
CDY45446
CDY48477
CDY53373

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G78380.1 CDX83922 AT1G17190.1 21798944
AT1G78380.1 CDX96787 AT1G17190.1 21798944
AT1G78380.1 CDY48477 AT1G17190.1 21798944
AT1G78380.1 CDY45446 AT2G29490.1 21798944
AT1G78380.1 CDY53373 AT2G29490.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY26861 Canola cytosol 96.35 96.35
CDX68016 Canola cytosol 83.11 83.11
AT1G78380.1 Thale cress cytosol 82.65 82.65
CDX79261 Canola cytosol 82.65 82.65
CDX79258 Canola cytosol 39.27 76.79
CDY21758 Canola cytosol 73.06 73.06
CDX81808 Canola cytosol 72.15 72.15
CDY21757 Canola cytosol 71.69 71.69
CDX81810 Canola cytosol 71.69 71.69
CDY48476 Canola cytosol 70.78 70.78
CDY26266 Canola cytosol 70.32 70.32
CDX81809 Canola cytosol 69.86 69.86
CDY21756 Canola cytosol 69.86 69.86
CDX68018 Canola cytosol 69.41 69.72
CDX79260 Canola cytosol 68.95 69.59
CDX79259 Canola cytosol 69.41 69.41
CDX68017 Canola cytosol 68.49 69.12
CDX87452 Canola cytosol 69.41 69.09
CDX81807 Canola cytosol 68.49 68.81
CDX88441 Canola cytosol 68.95 68.33
CDX88440 Canola cytosol 68.04 67.73
CDY26267 Canola cytosol 65.75 66.98
KRH43843 Soybean cytosol 66.21 66.21
CDX88438 Canola cytosol 64.84 65.14
CDX88439 Canola cytosol 64.84 65.14
CDY48475 Canola cytosol 50.23 65.09
CDX68019 Canola cytosol 65.3 65.0
KRH13622 Soybean cytosol 50.23 64.33
CDX96787 Canola cytosol 63.93 63.93
CDX83922 Canola cytosol 63.93 63.93
Solyc12g011310.1.1 Tomato plastid 63.01 63.01
PGSC0003DMT400071059 Potato cytosol 61.64 61.36
Solyc07g056490.2.1 Tomato extracellular 61.19 61.19
CDY58045 Canola cytosol 62.56 61.16
CDY25833 Canola cytosol 62.56 61.16
KRH43845 Soybean cytosol 61.19 60.36
CDY25831 Canola cytosol 61.64 60.27
CDY48477 Canola cytosol 52.51 60.21
VIT_10s0003g04250.t01 Wine grape cytosol 26.03 60.0
KRH13625 Soybean cytosol 59.82 59.82
PGSC0003DMT400038054 Potato endoplasmic reticulum 59.82 59.82
VIT_19s0093g00370.t01 Wine grape cytosol 31.96 57.85
KRH13620 Soybean cytosol 57.08 56.56
VIT_19s0093g00350.t01 Wine grape cytosol 56.62 56.11
VIT_19s0093g00320.t01 Wine grape cytosol 56.62 56.11
KRH02498 Soybean cytosol 55.71 55.96
VIT_19s0093g00400.t01 Wine grape cytosol 55.71 55.2
KRH43846 Soybean cytosol 50.23 53.92
CDX87952 Canola cytosol 55.25 53.3
CDY12324 Canola cytosol 54.79 52.86
CDY45140 Canola cytosol 27.4 47.24
CDX68020 Canola cytosol 7.31 44.44
CDY07793 Canola cytosol 32.42 44.38
CDY34896 Canola cytosol 42.47 40.97
CDY30898 Canola cytosol 43.38 40.6
CDY56090 Canola mitochondrion 37.9 39.9
CDY45138 Canola cytosol 40.18 39.64
CDX77247 Canola cytosol 40.18 39.29
CDY16220 Canola cytosol 40.64 39.21
CDY14704 Canola cytosol 40.18 38.6
CDY37984 Canola cytosol 39.73 38.33
CDX93432 Canola cytosol 39.73 38.33
CDY30896 Canola cytosol 40.18 38.1
CDY40288 Canola cytosol, plastid 39.27 37.89
CDY37985 Canola cytosol 39.27 37.89
CDY11636 Canola mitochondrion 38.81 36.96
CDY65968 Canola cytosol 38.81 36.96
CDY38773 Canola cytosol 37.9 36.4
CDY11637 Canola mitochondrion 37.9 36.4
CDY11635 Canola cytosol 38.81 36.32
CDY38775 Canola cytosol 38.81 36.32
CDY56091 Canola cytosol 37.9 36.09
CDY23533 Canola cytosol 37.9 35.47
CDY48383 Canola cytosol 37.9 35.47
CDY28452 Canola cytosol 31.51 35.2
CDY25824 Canola cytosol 31.51 34.33
CDY38774 Canola cytosol 38.81 33.33
CDY23534 Canola cytosol, mitochondrion, plastid 21.92 26.23
Protein Annotations
Gene3D:1.20.1050.10MapMan:18.8.1.4Gene3D:3.40.30.10UniProt:A0A078FJM2EnsemblPlants:CDY14615ProteinID:CDY14615
ProteinID:CDY14615.1GO:GO:0003674GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00084355001InterPro:Glutathione-S-Trfase_C-like
InterPro:Glutathione-S-Trfase_C_sfInterPro:Glutathione_S-Trfase_NInterPro:IPR004045InterPro:IPR010987PFAM:PF02798PFAM:PF13410
PFscan:PS50404PFscan:PS50405PANTHER:PTHR11260PANTHER:PTHR11260:SF479SUPFAM:SSF47616SUPFAM:SSF52833
InterPro:Thioredoxin-like_sfUniParc:UPI0004EEC6F6SEG:seg:::
Description
BnaC02g24980DBnaC02g24980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJM2]
Coordinates
chrLK032045:+:331580..332802
Molecular Weight (calculated)
25755.8 Da
IEP (calculated)
4.949
GRAVY (calculated)
-0.492
Length
219 amino acids
Sequence
(BLAST)
001: MANEVILLDF WPSMFGMRTR IALREKGIEF EYRDEDLWNK SPLLLETNPV HKKIPVLIHN GKPVCESTIQ VQYIDEVWSD KNRILPSDPY QRAQARFWVD
101: FIDKKMYDAQ RKVWGTKGEE QETGKKEFIE LLKTLESELG ENTYFGGDDF GYVDIGLIGF YSWFHAYEKY GNLNIESECP KLIAWAKTCM QRESVAKSLP
201: DSEKVIEFVT EIRKKFMLE
Best Arabidopsis Sequence Match ( AT1G78380.1 )
(BLAST)
001: MANEVILLDF WPSMFGMRTR IALREKGVEF EYREEDLRNK SPLLLQMNPI HKKIPVLIHN GKPVNESIIQ VQYIDEVWSH KNPILPSDPY LRAQARFWAD
101: FIDKKLYDAQ RKVWATKGEE QEAGKKDFIE ILKTLESELG DKPYFSGDDF GYVDIALIGF YTWFPAYEKF ANFSIESEVP KLIAWVKKCL QRESVAKSLP
201: DPEKVTEFVS ELRKKFVPE
Arabidopsis Description
GSTU19GSTU19 [Source:UniProtKB/TrEMBL;Acc:A0A178W4K6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.