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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • cytosol 4
  • vacuole 4
  • extracellular 3
  • endoplasmic reticulum 4
  • plasma membrane 3
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, secretory
BaCelLo:cytosol
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:cytosol
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:cytosol
 plastid: 20363867
extracellular: 22364583
plastid: 22908117
extracellular: 29876421
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 22364583 doi
P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc05g006730.2.1
Solyc05g006740.2.1
Solyc07g056490.2.1
Solyc12g011310.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G17190.1 Solyc05g006730.2.1 AT1G10360.1 21798944
AT1G17190.1 Solyc05g006740.2.1 AT1G10360.1 21798944
AT1G78380.1 Solyc07g056490.2.1 AT1G17190.1 21798944
AT1G78380.1 Solyc12g011310.1.1 AT1G17190.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400038054 Potato endoplasmic reticulum 95.89 95.89
Solyc12g011310.1.1 Tomato plastid 74.43 74.43
Solyc07g056430.2.1 Tomato cytosol 47.03 73.57
Solyc07g056480.2.1 Tomato cytosol, plastid 69.41 69.09
Solyc07g056470.2.1 Tomato plastid 68.95 68.64
Solyc07g056440.2.1 Tomato cytosol 68.49 67.57
Solyc07g056460.2.1 Tomato plastid 67.58 67.27
Solyc07g056450.2.1 Tomato cytosol 42.47 66.91
KRH43843 Soybean cytosol 66.67 66.67
Solyc07g056510.2.1 Tomato cytosol 66.21 66.21
Solyc07g056420.2.1 Tomato extracellular 66.21 65.91
AT1G78380.1 Thale cress cytosol 64.84 64.84
CDX79261 Canola cytosol 64.84 64.84
AT1G78360.1 Thale cress endoplasmic reticulum 64.84 64.55
CDX68016 Canola cytosol 64.38 64.38
Bra003644.1-P Field mustard cytosol 64.38 64.38
KRH02498 Soybean cytosol 63.93 64.22
Bra003645.1-P Field mustard cytosol 59.82 64.22
KRH13625 Soybean cytosol 63.93 63.93
Solyc10g007640.2.1 Tomato cytosol 64.38 63.8
KRH13622 Soybean cytosol 49.77 63.74
AT1G78340.1 Thale cress cytosol 63.01 63.3
CDX68017 Canola cytosol 62.56 63.13
AT1G17180.1 Thale cress cytosol 63.47 62.9
CDX68018 Canola cytosol 62.56 62.84
CDX79260 Canola cytosol 62.1 62.67
Bra003646.1-P Field mustard cytosol 62.1 62.39
CDX87452 Canola cytosol 62.56 62.27
Bra035031.1-P Field mustard cytosol 62.56 62.27
Solyc12g011300.1.1 Tomato cytosol 62.56 62.27
VIT_10s0003g04250.t01 Wine grape cytosol 26.94 62.11
Bra026684.1-P Field mustard cytosol 62.1 62.1
Bra026681.1-P Field mustard cytosol 62.1 62.1
CDY26861 Canola cytosol 62.1 62.1
CDY21758 Canola cytosol 62.1 62.1
VIT_19s0093g00400.t01 Wine grape cytosol 62.56 61.99
AT1G78370.1 Thale cress cytosol 61.19 61.75
CDX79259 Canola cytosol 61.64 61.64
CDX81808 Canola cytosol 61.64 61.64
Bra025994.1-P Field mustard cytosol 61.64 61.64
CDY26266 Canola cytosol 61.64 61.64
VIT_19s0093g00350.t01 Wine grape cytosol 62.1 61.54
AT1G17170.1 Thale cress cytosol 61.19 61.47
CDX88440 Canola cytosol 61.64 61.36
Bra016615.1-P Field mustard cytosol 61.19 61.19
CDX83922 Canola cytosol 61.19 61.19
CDY14615 Canola cytosol 61.19 61.19
CDX96787 Canola cytosol 61.19 61.19
VIT_19s0093g00370.t01 Wine grape cytosol 33.79 61.16
KRH13620 Soybean cytosol 61.64 61.09
CDY48476 Canola cytosol 60.73 60.73
Bra026680.1-P Field mustard cytosol 60.73 60.73
CDY48475 Canola cytosol 46.58 60.35
CDX81809 Canola cytosol 60.27 60.27
AT1G17190.1 Thale cress cytosol 60.27 60.0
CDY21757 Canola cytosol 59.82 59.82
KRH43845 Soybean cytosol 60.27 59.46
Bra025995.1-P Field mustard cytosol 57.99 59.07
CDX81810 Canola cytosol 58.9 58.9
CDX88438 Canola cytosol 58.45 58.72
Bra035029.1-P Field mustard cytosol 58.45 58.72
CDX88439 Canola cytosol 58.45 58.72
CDX81807 Canola cytosol 58.45 58.72
CDX88441 Canola cytosol 58.9 58.37
VIT_19s0093g00320.t01 Wine grape cytosol 58.9 58.37
Bra025993.1-P Field mustard cytosol 57.53 57.27
CDY26267 Canola cytosol 56.16 57.21
Bra026679.1-P Field mustard cytosol 57.08 57.08
KRH43846 Soybean cytosol 52.97 56.86
CDY21756 Canola cytosol 56.62 56.62
CDY48477 Canola cytosol 49.32 56.54
Solyc10g007620.1.1 Tomato cytosol 56.16 56.16
Solyc02g081240.1.1 Tomato cytosol 55.25 54.5
CDX87952 Canola cytosol 55.25 53.3
CDY12324 Canola cytosol 55.25 53.3
AT3G43800.1 Thale cress cytosol 55.25 53.3
Bra034977.1-P Field mustard cytosol 55.25 53.3
Solyc12g011320.1.1 Tomato cytosol 51.14 51.14
Bra003648.1-P Field mustard cytosol 31.96 46.98
Solyc05g026220.1.1 Tomato cytosol 28.77 39.38
Solyc05g006750.2.1 Tomato cytosol 39.27 37.55
Solyc05g006730.2.1 Tomato mitochondrion 38.36 37.33
Solyc05g006740.2.1 Tomato cytosol 35.62 36.45
Solyc05g026210.1.1 Tomato nucleus 37.44 35.65
CDX68020 Canola cytosol 4.57 27.78
Protein Annotations
Gene3D:1.20.1050.10MapMan:18.8.1.4Gene3D:3.40.30.10GO:GO:0003674GO:GO:0003824GO:GO:0004364
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0006749GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009407GO:GO:0009987
GO:GO:0016740GO:GO:0019748InterPro:Glutathione-S-Trfase_C-likeInterPro:Glutathione-S-Trfase_C_sfInterPro:Glutathione_S-Trfase_NInterPro:IPR004045
InterPro:IPR010987UniProt:K4CGI2PFAM:PF02798PFAM:PF13410PFscan:PS50404PFscan:PS50405
PANTHER:PTHR11260PANTHER:PTHR11260:SF479SUPFAM:SSF47616SUPFAM:SSF52833EnsemblPlantsGene:Solyc07g056490.2EnsemblPlants:Solyc07g056490.2.1
InterPro:Thioredoxin-like_sfUniParc:UPI000276B25E::::
Description
No Description!
Coordinates
chr7:-:64300735..64302388
Molecular Weight (calculated)
25383.7 Da
IEP (calculated)
5.204
GRAVY (calculated)
-0.240
Length
219 amino acids
Sequence
(BLAST)
001: MADEVVLLGT YVSMFAVRVK IALAEKGIQY EYKEENLVNK SPLLLQMNPI HKKIPVLIHN GKPICESLII VEYIDEVWND KSPLLPSDPY KRAQARFWAD
101: YVDKKIYDGG KKIWTTKVEE QEAANKEFIE CLKVLEGELG DKPYFDGESF GFVDLALIPY YSWFPAYEKF GKFSIEPECP KFVAWANRCM QKENVSKYLS
201: DPDKIYDFVV MLRQRIGIA
Best Arabidopsis Sequence Match ( AT1G78360.1 )
(BLAST)
001: MAAEVILLGF WPSMFGMRTM IALEEKGVKY EYREEDVINN KSPLLLEMNP IHKTIPVLIH NGKPVLESLI QIQYIDEVWS DNNSFLPSDP YHRAQALFWA
101: DFIDKKLYVC GRKTWATKGE ELEAANKEFI EILKTLQCEL GEKPYFGGDK FGFVDIVLIG FYSWFPAYQK FGNFSIEPEC LKLIAWGKRC MQRESVAKAL
201: PDSEKVVGYV LQLKKLYGIE
Arabidopsis Description
ATGSTU21glutathione S-transferase TAU 21 [Source:TAIR;Acc:AT1G78360]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.