Factsheet for Solyc12g011310.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
vacuole 5
extracellular 4
endoplasmic reticulum 4
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	cytosol
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g006730.2.1
Solyc05g006740.2.1
Solyc07g056490.2.1
Solyc12g011310.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17190.1	Solyc05g006730.2.1	AT1G10360.1	21798944
AT1G17190.1	Solyc05g006740.2.1	AT1G10360.1	21798944
AT1G78380.1	Solyc07g056490.2.1	AT1G17190.1	21798944
AT1G78380.1	Solyc12g011310.1.1	AT1G17190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g056490.2.1	Tomato	extracellular	74.43	74.43
Solyc07g056430.2.1	Tomato	cytosol	46.12	72.14
Solyc07g056450.2.1	Tomato	cytosol	42.47	66.91
Solyc07g056510.2.1	Tomato	cytosol	66.67	66.67
Solyc07g056480.2.1	Tomato	cytosol, plastid	66.67	66.36
Solyc07g056440.2.1	Tomato	cytosol	66.67	65.77
Solyc07g056470.2.1	Tomato	plastid	65.75	65.45
AT1G78380.1	Thale cress	cytosol	64.38	64.38
KRH43843	Soybean	cytosol	64.38	64.38
AT1G17170.1	Thale cress	cytosol	63.47	63.76
Solyc07g056460.2.1	Tomato	plastid	63.93	63.64
Solyc10g007640.2.1	Tomato	cytosol	63.93	63.35
Solyc07g056420.2.1	Tomato	extracellular	63.47	63.18
CDY14615	Canola	cytosol	63.01	63.01
CDY26861	Canola	cytosol	63.01	63.01
VIT_19s0093g00370.t01	Wine grape	cytosol	34.7	62.81
Bra025995.1-P	Field mustard	cytosol	61.64	62.79
KRH13620	Soybean	cytosol	63.01	62.44
KRH02498	Soybean	cytosol	62.1	62.39
CDY48475	Canola	cytosol	47.95	62.13
VIT_10s0003g04250.t01	Wine grape	cytosol	26.94	62.11
CDX81810	Canola	cytosol	62.1	62.1
AT1G17180.1	Thale cress	cytosol	62.56	61.99
AT1G78360.1	Thale cress	endoplasmic reticulum	62.1	61.82
Solyc12g011300.1.1	Tomato	cytosol	62.1	61.82
CDY48476	Canola	cytosol	61.64	61.64
Bra026684.1-P	Field mustard	cytosol	61.64	61.64
CDY21758	Canola	cytosol	61.64	61.64
Bra026680.1-P	Field mustard	cytosol	61.64	61.64
CDX81809	Canola	cytosol	61.64	61.64
KRH13622	Soybean	cytosol	47.95	61.4
Bra003645.1-P	Field mustard	cytosol	57.08	61.27
KRH43845	Soybean	cytosol	62.1	61.26
Bra025994.1-P	Field mustard	cytosol	61.19	61.19
CDX68016	Canola	cytosol	61.19	61.19
CDX79261	Canola	cytosol	61.19	61.19
Bra003644.1-P	Field mustard	cytosol	61.19	61.19
CDY26266	Canola	cytosol	61.19	61.19
CDY26267	Canola	cytosol	59.82	60.93
CDX87452	Canola	cytosol	61.19	60.91
Bra035031.1-P	Field mustard	cytosol	61.19	60.91
AT1G78370.1	Thale cress	cytosol	60.27	60.83
KRH13625	Soybean	cytosol	60.73	60.73
CDX81808	Canola	cytosol	60.73	60.73
CDY21757	Canola	cytosol	60.73	60.73
Bra026681.1-P	Field mustard	cytosol	60.73	60.73
CDX81807	Canola	cytosol	60.27	60.55
CDX68017	Canola	cytosol	59.82	60.37
VIT_19s0093g00350.t01	Wine grape	cytosol	60.73	60.18
CDX79260	Canola	cytosol	59.36	59.91
CDY21756	Canola	cytosol	59.82	59.82
VIT_19s0093g00400.t01	Wine grape	cytosol	60.27	59.73
Bra026679.1-P	Field mustard	cytosol	59.36	59.36
CDX68018	Canola	cytosol	58.9	59.17
Bra003646.1-P	Field mustard	cytosol	58.9	59.17
CDX88441	Canola	cytosol	59.36	58.82
CDX88440	Canola	cytosol	58.9	58.64
CDX79259	Canola	cytosol	58.45	58.45
CDX88439	Canola	cytosol	57.53	57.8
CDX88438	Canola	cytosol	57.53	57.8
CDX96787	Canola	cytosol	57.53	57.53
CDX83922	Canola	cytosol	57.53	57.53
Bra016615.1-P	Field mustard	cytosol	57.53	57.53
VIT_19s0093g00320.t01	Wine grape	cytosol	57.99	57.47
KRH43846	Soybean	cytosol	53.42	57.35
Bra035029.1-P	Field mustard	cytosol	57.08	57.34
AT1G78340.1	Thale cress	cytosol	57.08	57.34
Bra025993.1-P	Field mustard	cytosol	57.08	56.82
AT1G17190.1	Thale cress	cytosol	56.16	55.91
Solyc12g011320.1.1	Tomato	cytosol	55.25	55.25
AT3G43800.1	Thale cress	cytosol	57.08	55.07
CDY48477	Canola	cytosol	47.95	54.97
CDX87952	Canola	cytosol	55.25	53.3
Bra034977.1-P	Field mustard	cytosol	54.79	52.86
CDY12324	Canola	cytosol	54.79	52.86
Solyc10g007620.1.1	Tomato	cytosol	52.05	52.05
Solyc02g081240.1.1	Tomato	cytosol	50.68	50.0
Bra003648.1-P	Field mustard	cytosol	33.33	48.99
Solyc05g006740.2.1	Tomato	cytosol	37.9	38.78
Solyc05g006730.2.1	Tomato	mitochondrion	39.27	38.22
Solyc05g026220.1.1	Tomato	cytosol	27.4	37.5
Solyc05g006750.2.1	Tomato	cytosol	38.81	37.12
Solyc05g026210.1.1	Tomato	nucleus	37.44	35.65
CDX68020	Canola	cytosol	4.11	25.0

Protein Annotations

Gene3D:1.20.1050.10	MapMan:18.8.1.4	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006749	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009407	GO:GO:0009987
GO:GO:0016740	GO:GO:0019748	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045
InterPro:IPR010987	UniProt:K4DCL7	PFAM:PF02798	PFAM:PF13410	PFscan:PS50404	PFscan:PS50405
PANTHER:PTHR11260	PANTHER:PTHR11260:SF479	SUPFAM:SSF47616	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc12g011310.1	EnsemblPlants:Solyc12g011310.1.1
InterPro:Thioredoxin-like_sf	UniParc:UPI000276A19B	:	:	:	:

Description

No Description!

Coordinates

chr12:-:4159705..4160917

Molecular Weight (calculated)

25622.0 Da

IEP (calculated)

7.491

GRAVY (calculated)

-0.349

Length

219 amino acids

Sequence
(BLAST)

001: MSNEVVLLSA YVSMFGMRVR IALHEKGIQY EYKEEDLSNK SELLLQMNPI HKKIPVLIHN GKPICESLII VEYIDEVWKD KSPLMPFNPY KRAQARFWAD
101: FIDKKVYDSG KRIWATKGED QEAAKKEFIE YLKLLEGELG DKTYFNGENF GFVDLALIPF YSWFPTFEKF GNFNIEKECP KFVAWANKCI YKDSVSKSLA
201: ESNKVYEYVL KMKQHLGLP

Best Arabidopsis Sequence Match ( AT1G17170.1 )
(BLAST)

001: MADEVILLDF WASMFGMRTR IALAEKRVKY DHREEDLWNK SSLLLEMNPV HKKIPVLIHN GKPVCESLIQ IEYIDETWPD NNPLLPSDPY KRAHAKFWAD
101: FIDKKVNVTA RRIWAVKGEE QEAAKELIEI LKTLESELGD KKYFGDETFG YVDIALIGFH SWFAVYEKFG NVSIESECSK LVAWAKRCLE RESVAKALPE
201: SEKVITFISE RRKKLGLE

Arabidopsis Description

GSTU24Glutathione S-transferase U24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHH6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.