Factsheet for VIT_19s0093g00320.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 2
plastid 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g01380.t01
VIT_06s0004g05670.t01
VIT_06s0004g05680.t01
VIT_06s0004g05700.t01
VIT_06s0004g05710.t01
VIT_10s0003g04250.t01
VIT_14s0060g02170.t01
VIT_19s0093g00320.t01
VIT_19s0093g00350.t01
VIT_19s0093g00370.t01
VIT_19s0093g00400.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17180.1	VIT_06s0004g05670.t01	AT2G29420.1	21798944
AT1G17180.1	VIT_06s0004g05680.t01	AT2G29420.1	21798944
AT1G17180.1	VIT_06s0004g05700.t01	AT2G29420.1	21798944
AT1G17180.1	VIT_06s0004g05710.t01	AT2G29420.1	21798944
AT1G17180.1	VIT_14s0060g02170.t01	AT2G29420.1	21798944
AT1G17190.1	VIT_01s0026g01380.t01	AT1G10360.1	21798944
AT1G17190.1	VIT_06s0004g05670.t01	AT2G29490.1	21798944
AT1G17190.1	VIT_06s0004g05680.t01	AT2G29490.1	21798944
AT1G17190.1	VIT_06s0004g05700.t01	AT2G29490.1	21798944
AT1G17190.1	VIT_06s0004g05710.t01	AT2G29490.1	21798944
AT1G17190.1	VIT_14s0060g02170.t01	AT2G29490.1	21798944
AT1G78340.1	VIT_06s0004g05670.t01	AT2G29490.1	21798944
AT1G78340.1	VIT_06s0004g05680.t01	AT2G29490.1	21798944
AT1G78340.1	VIT_06s0004g05700.t01	AT2G29490.1	21798944
AT1G78340.1	VIT_06s0004g05710.t01	AT2G29490.1	21798944
AT1G78340.1	VIT_14s0060g02170.t01	AT2G29490.1	21798944
AT1G78380.1	VIT_10s0003g04250.t01	AT1G17190.1	21798944
AT1G78380.1	VIT_19s0093g00320.t01	AT1G17190.1	21798944
AT1G78380.1	VIT_19s0093g00350.t01	AT1G17190.1	21798944
AT1G78380.1	VIT_19s0093g00370.t01	AT1G17190.1	21798944
AT1G78380.1	VIT_19s0093g00400.t01	AT1G17190.1	21798944
AT1G78380.1	VIT_06s0004g05670.t01	AT2G29490.1	21798944
AT1G78380.1	VIT_06s0004g05680.t01	AT2G29490.1	21798944
AT1G78380.1	VIT_06s0004g05700.t01	AT2G29490.1	21798944
AT1G78380.1	VIT_06s0004g05710.t01	AT2G29490.1	21798944
AT1G78380.1	VIT_14s0060g02170.t01	AT2G29490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g04250.t01	Wine grape	cytosol	35.75	83.16
VIT_19s0093g00400.t01	Wine grape	cytosol	78.73	78.73
VIT_19s0093g00350.t01	Wine grape	cytosol	78.28	78.28
VIT_19s0093g00370.t01	Wine grape	cytosol	36.65	66.94
VIT_19s0015g02560.t01	Wine grape	cytosol	31.67	63.64
VIT_19s0093g00310.t01	Wine grape	cytosol	62.9	63.47
VIT_19s0015g02880.t01	Wine grape	cytosol	59.73	63.46
VIT_19s0015g02890.t01	Wine grape	cytosol	62.44	63.01
VIT_00s0240g00020.t01	Wine grape	cytosol	33.48	62.71
VIT_19s0093g00110.t01	Wine grape	cytosol	61.99	62.56
VIT_19s0015g02700.t01	Wine grape	cytosol	61.99	62.56
VIT_19s0093g00150.t01	Wine grape	cytosol	61.54	62.1
VIT_19s0015g02590.t01	Wine grape	cytosol	58.37	61.72
VIT_19s0015g02730.t01	Wine grape	cytosol	61.09	61.64
VIT_19s0015g02830.t01	Wine grape	cytosol	32.58	60.0
KRH43843	Soybean	cytosol	59.28	59.82
VIT_00s0240g00050.t01	Wine grape	cytosol	58.82	59.36
CDY21758	Canola	cytosol	58.37	58.9
VIT_19s0093g00190.t01	Wine grape	cytosol	58.37	58.9
Solyc07g056490.2.1	Tomato	extracellular	58.37	58.9
PGSC0003DMT400038054	Potato	endoplasmic reticulum	58.37	58.9
CDX81808	Canola	cytosol	58.37	58.9
Bra026684.1-P	Field mustard	cytosol	58.37	58.9
AT1G17180.1	Thale cress	cytosol	58.82	58.82
Bra026681.1-P	Field mustard	cytosol	57.92	58.45
VIT_19s0027g00460.t01	Wine grape	cytosol	58.82	58.3
Solyc12g011310.1.1	Tomato	plastid	57.47	57.99
Bra026680.1-P	Field mustard	cytosol	57.47	57.99
VIT_19s0015g02680.t01	Wine grape	cytosol	57.47	57.99
AT1G17170.1	Thale cress	cytosol	57.01	57.8
VIT_19s0093g00260.t01	Wine grape	cytosol	57.01	57.53
CDY21757	Canola	cytosol	57.01	57.53
VIT_19s0093g00220.t01	Wine grape	cytosol	58.82	57.27
Bra025994.1-P	Field mustard	cytosol	56.56	57.08
CDY26266	Canola	cytosol	56.56	57.08
CDY48476	Canola	cytosol	56.11	56.62
CDY14615	Canola	cytosol	56.11	56.62
Bra003644.1-P	Field mustard	cytosol	55.66	56.16
CDX68016	Canola	cytosol	55.66	56.16
CDY26861	Canola	cytosol	55.66	56.16
CDX81809	Canola	cytosol	55.66	56.16
PGSC0003DMT400071059	Potato	cytosol	55.66	55.91
CDX79261	Canola	cytosol	55.2	55.71
CDX81810	Canola	cytosol	55.2	55.71
CDY48475	Canola	cytosol	42.53	55.62
KRH13622	Soybean	cytosol	42.99	55.56
VIT_19s0093g00160.t01	Wine grape	cytosol	52.04	55.02
Bra035031.1-P	Field mustard	cytosol	54.75	55.0
CDX87452	Canola	cytosol	54.75	55.0
AT1G78380.1	Thale cress	cytosol	54.3	54.79
Bra026679.1-P	Field mustard	cytosol	54.3	54.79
CDY21756	Canola	cytosol	54.3	54.79
CDX88438	Canola	cytosol	53.39	54.13
CDX88439	Canola	cytosol	53.39	54.13
Bra035029.1-P	Field mustard	cytosol	53.39	54.13
CDX88440	Canola	cytosol	53.85	54.09
CDX68018	Canola	cytosol	52.94	53.67
Bra003646.1-P	Field mustard	cytosol	52.94	53.67
CDX81807	Canola	cytosol	52.94	53.67
Bra025995.1-P	Field mustard	cytosol	52.04	53.49
AT1G78370.1	Thale cress	cytosol	52.49	53.46
CDX79259	Canola	cytosol	52.94	53.42
KRH02498	Soybean	cytosol	52.49	53.21
AT1G78360.1	Thale cress	endoplasmic reticulum	52.94	53.18
CDY26267	Canola	cytosol	51.58	53.02
VIT_04s0079g00360.t01	Wine grape	cytosol	52.49	52.73
CDX79260	Canola	cytosol	51.58	52.53
Bra016615.1-P	Field mustard	cytosol	52.04	52.51
CDX96787	Canola	cytosol	52.04	52.51
CDX83922	Canola	cytosol	52.04	52.51
KRH13625	Soybean	cytosol	52.04	52.51
CDX68017	Canola	cytosol	51.13	52.07
Bra003645.1-P	Field mustard	cytosol	47.96	51.96
AT1G17190.1	Thale cress	cytosol	51.58	51.82
KRH43845	Soybean	cytosol	52.04	51.8
AT1G78340.1	Thale cress	cytosol	50.68	51.38
CDX88441	Canola	cytosol	51.13	51.13
KRH13620	Soybean	cytosol	51.13	51.13
VIT_19s0015g02690.t01	Wine grape	cytosol	37.56	50.92
Bra025993.1-P	Field mustard	cytosol	48.87	49.09
KRH43846	Soybean	cytosol	44.8	48.53
CDY48477	Canola	cytosol	41.63	48.17
Bra034977.1-P	Field mustard	cytosol	48.42	47.14
AT3G43800.1	Thale cress	cytosol	48.42	47.14
CDX87952	Canola	cytosol	48.42	47.14
CDY12324	Canola	cytosol	48.42	47.14
VIT_19s0093g00290.t01	Wine grape	mitochondrion	25.34	43.75
Bra003648.1-P	Field mustard	cytosol	28.96	42.95
VIT_19s0015g02610.t01	Wine grape	cytosol	61.99	41.9
VIT_01s0026g01340.t01	Wine grape	cytosol	38.01	36.21
VIT_01s0026g01330.t01	Wine grape	cytosol	36.2	34.48
VIT_01s0026g01380.t01	Wine grape	endoplasmic reticulum	36.65	31.03
CDX68020	Canola	cytosol	4.52	27.78

Protein Annotations

Gene3D:1.20.1050.10	EntrezGene:100232915	wikigene:100232915	MapMan:18.8.1.4	Gene3D:3.40.30.10	ProteinID:AAN85826
ProteinID:AAN85826.1	EMBL:AM437830	EMBL:AY156048	ProteinID:CAN78389	ProteinID:CAN78389.1	ProteinID:CCB57187
ProteinID:CCB57187.1	UniProt:F6HR79	EMBL:FN596009	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006749	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009407	GO:GO:0009987
GO:GO:0016740	GO:GO:0019748	EntrezGene:GST1	wikigene:GST1	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like
InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	PFAM:PF00043	PFAM:PF02798
PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR11260	PANTHER:PTHR11260:SF479	SUPFAM:SSF47616	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	UniParc:UPI00015CD09A	ArrayExpress:VIT_19s0093g00320	EnsemblPlantsGene:VIT_19s0093g00320	EnsemblPlants:VIT_19s0093g00320.t01	unigene:Vvi.17667

Description

No Description!

Coordinates

chr19:-:16915105..16916114

Molecular Weight (calculated)

25571.0 Da

IEP (calculated)

6.781

GRAVY (calculated)

-0.142

Length

221 amino acids

Sequence
(BLAST)

001: MANSDHIVLL DYSASPFAMR VRLALAAKGI EYLIKEEDLT QSKSSLLLKV NPVHQKIPVL IHNGKPVCES LIIVEYIDEV WKDRCRLLPA DPYQRAKAKF
101: WADFIDKMVY PSCYNVWAAN GEVQEAGKKE FIDRIKMLEG ELKSNPYFGG ETLGFLDIVF LPSYYWFHTF ETFGKFSIEA ECPKLVAWGK RCMEEEFVYT
201: SLPHPHKVYD LVVDYRKKMG I

Best Arabidopsis Sequence Match ( AT1G17170.1 )
(BLAST)

001: MADEVILLDF WASMFGMRTR IALAEKRVKY DHREEDLWNK SSLLLEMNPV HKKIPVLIHN GKPVCESLIQ IEYIDETWPD NNPLLPSDPY KRAHAKFWAD
101: FIDKKVNVTA RRIWAVKGEE QEAAKELIEI LKTLESELGD KKYFGDETFG YVDIALIGFH SWFAVYEKFG NVSIESECSK LVAWAKRCLE RESVAKALPE
201: SEKVITFISE RRKKLGLE

Arabidopsis Description

GSTU24Glutathione S-transferase U24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHH6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.